Evidence map›Paper›PMID 32224865›Full record

ArticleGenes2020

Spectrum of Genetic Variants Associated with Anterior Segment Dysgenesis in South Florida.

Saradadevi Thanikachalam, Elizabeth Hodapp, Ta C Chang, Dayna Morel Swols, Filiz B Cengiz, Shengru Guo, Mohammad F Zafeer, Serhat Seyhan, Guney Bademci, William K Scott and 2 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Observational
  6. Diagnostic yield of next generation sequencing gene panel assays for early-onset glaucoma in an ethnically diverse population.Journal of AAPOS : the official publication of the American Association for Pediatric Ophthalmology and Strabismus · 2022
    Article
  7. Article
  8. NovelFrontiers in cell and developmental biology · 2021
    Article
  9. HeterozygousMolecular vision · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Saradadevi ThanikachalamJohn P. Hussmann Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL 33136, USA.
Elizabeth HodappBascom Palmer Eye Institute, University of Miami Miller School of Medicine, Miami, FL 33136, USA.
Ta C ChangBascom Palmer Eye Institute, University of Miami Miller School of Medicine, Miami, FL 33136, USA.
Dayna Morel SwolsDepartment of Human Genetics, University of Miami Miller School of Medicine, Miami, FL 33136, USA.
Filiz B CengizJohn P. Hussmann Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL 33136, USA.
Shengru GuoJohn P. Hussmann Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL 33136, USA.
Mohammad F ZafeerJohn P. Hussmann Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL 33136, USA.
Serhat SeyhanJohn P. Hussmann Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL 33136, USA.
Guney BademciJohn P. Hussmann Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL 33136, USA.
William K ScottJohn P. Hussmann Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL 33136, USA.
Alana GrajewskiBascom Palmer Eye Institute, University of Miami Miller School of Medicine, Miami, FL 33136, USA.
Mustafa TekinJohn P. Hussmann Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, FL 33136, USA.
University of Miami · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Anterior segment dysgenesis (ASD) comprises a wide spectrum of developmental conditions affecting the cornea, iris, and lens, which may be associated with abnormalities of other organs. To identify disease-causing variants, we performed exome sequencing in 24 South Florida families with ASD. We identified 12 likely causative variants in 10 families (42%), including single nucleotide or small insertion-deletion variants in B3GLCT, BMP4, CYP1B1, FOXC1, FOXE3, GJA1, PXDN, and TP63, and a large copy number variant involving PAX6. Four variants were novel. Each variant was detected only in one family. Likely causative variants were detected in 1 out of 7 black and 9 out of 17 white families. In conclusion, exome sequencing for ASD allows us to identify a wide spectrum of rare DNA variants in South Florida. Further studies will explore missing variants, especially in the black communities.

Indexed as

Genetic MarkersPolymorphism, Single NucleotideAdolescentAdultChildEye AbnormalitiesFemaleFloridaHumansMalePedigreeGenetic Markersanterior segment dysgenesisexome sequencingprimary congenital glaucoma

Identifiers

PMID32224865
PMCPMC7230952
OpenAlexW3013445004

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.