Evidence map›Paper›PMID 32221920›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2020

Genome-Wide Proteomics and Phosphoproteomics Analysis of Trypanosoma cruzi During Differentiation.

Michel Batista, Juliana Carolina Amorim, Aline Castro Rodrigues Lucena, Fernanda Grande Kugeratski, Carla Vanessa de Paula Lima, Fabricio Klerynton Marchini

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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Michel BatistaCarlos Chagas Institute, Fiocruz Parana, Curitiba, Parana, Brazil.
Juliana Carolina AmorimFaculty of Medicine, Catholic University of Cuenca, Cuenca, Azuay, Ecuador.
Aline Castro Rodrigues LucenaCarlos Chagas Institute, Fiocruz Parana, Curitiba, Parana, Brazil.
Fernanda Grande KugeratskiDepartment of Cancer Biology, Metastasis Research Center, University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Carla Vanessa de Paula LimaMolecular Biology Institute of Parana, Curitiba, Parana, Brazil.
Fabricio Klerynton MarchiniCarlos Chagas Institute, Fiocruz Parana, Curitiba, Parana, Brazil. fabricio.marchini@fiocruz.br.
Fundação Carlos Chagas · BRInstituto de Biologia Molecular do Paraná · BRThe University of Texas MD Anderson Cancer Center · USUniversity of Cuenca · EC

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Trypanosoma cruzi is a pathogenic protozoan that still has an impact on public health, despite the decrease in the number of infection cases along the years. T. cruzi possesses an heteroxenic life cycle in which it differentiates in at least four forms. Among the differentiation processes, metacyclogenesis has been exploited in different views by researchers. An intriguing question that rises is how metacyclogenesis is triggered and controlled by cell signaling and which are the differentially expressed proteins and posttranslational modifications involved in this process. An important cell signaling pathway is the protein phosphorylation, and it is reinforced in T. cruzi in which the gene expression control occurs almost exclusively posttranscriptionally. Additionally, the number of protein kinases in T. cruzi is relatively high compared to other organisms. A way to approach these questions is evaluating the cells through phosphoproteomics and proteomics. In this chapter, we will describe the steps from the cell protein extraction, digestion and fractionation, phosphopeptide enrichment, to LC-MS/MS analysis as well as a brief overview on peptide identification. In addition, a published method for in vitro metacyclogenesis will be detailed.

Indexed as

Chromatography, LiquidGene Expression Regulation, DevelopmentalLife Cycle StagesParasitologyPhosphoproteinsPhosphorylationProteomicsProtozoan ProteinsTandem Mass SpectrometryTrypanosoma cruziPhosphoproteinsProtozoan ProteinsLC-MS/MSMass spectrometryMetacyclogenesisPhosphoproteomicsProteomicsTrypanosoma cruzi

Identifiers

PMID32221920
OpenAlexW3013934900

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.