Evidence map›Paper›PMID 32219508›Full record

ArticleMedical microbiology and immunology2020

Prevalence of Helicobacter pylori babA, oipA, sabA, and homB genes in isolates from Chinese patients with different gastroduodenal diseases.

Qiaoyun Zhao, Conghua Song, Ke Wang, Donghong Li, Yang Yang, Dongsheng Liu, Le Wang, Nanjin Zhou, Yong Xie

Abstract read
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Article in Medical microbiology and immunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Microbiology and molecular biology reviews : MMBR · 2026
    Review
  4. Article
  5. Research Status and Prospects ofGastroenterology research and practice · 2026
    Review
  6. International journal of molecular sciences · 2025
    Review
  7. Article
  8. Impact ofInternational journal of molecular sciences · 2025
    Article
  9. Narra J · 2025
    Article
  10. Article
  11. Article
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Qiaoyun ZhaoDepartment of Gastroenterology, First Affiliated Hospital of Nanchang University, No.17 Yongwaizheng Street, Donghu District, Nanchang, 330006, Jiangxi, China.ORCID http://orcid.org/0000-0001-9322-4748
Conghua SongDepartment of Gastroenterology, First Affiliated Hospital of Nanchang University, No.17 Yongwaizheng Street, Donghu District, Nanchang, 330006, Jiangxi, China.
Ke WangLaboratory of Biochemistry and Molecular Biology, Jiangxi Institute of Medical Sciences, Nanchang, 330006, Jiangxi, China.
Donghong LiLaboratory of Biochemistry and Molecular Biology, Jiangxi Institute of Medical Sciences, Nanchang, 330006, Jiangxi, China.
Yang YangDepartment of Gastroenterology, First Affiliated Hospital of Nanchang University, No.17 Yongwaizheng Street, Donghu District, Nanchang, 330006, Jiangxi, China.
Dongsheng LiuMicrobiology Laboratory, Gastroenterology Institute of Jiangxi Province, Nanchang, 330006, Jiangxi, China.
Le WangMicrobiology Laboratory, Gastroenterology Institute of Jiangxi Province, Nanchang, 330006, Jiangxi, China.
Nanjin ZhouLaboratory of Biochemistry and Molecular Biology, Jiangxi Institute of Medical Sciences, Nanchang, 330006, Jiangxi, China.
Yong XieDepartment of Gastroenterology, First Affiliated Hospital of Nanchang University, No.17 Yongwaizheng Street, Donghu District, Nanchang, 330006, Jiangxi, China. xieyong_tfahoncu@163.com.ORCID http://orcid.org/0000-0002-5290-5579

Funding

Leading Talent Training Plan of the Gan-Po Outstanding Talents 555 Project of Jiangxi Province 2010-3-61National Key Research and Development Program of China 2016YFC1302201National Natural Science Foundation of China 81260076National Natural Science Foundation of China 81860107National Natural Science Foundation of China 81970502Natural Science Foundation of Fujian Province of China 2017J01347Special Funds for Graduate Student Innovation of Jiangxi Province YC2017-B024
6 · The paper itself

Abstract

Disease outcome is associated with virulence factors of Helicobacter pylori (H. pylori), which are partially attributed to the outer membrane protein (OMP). This study aimed to investigate the correlation between the four OMP genes (babA, oipA, sabA, and homB) and gastroduodenal diseases. One hundred and seventy-seven H. pylori strains were isolated from Chinese patients with different gastroduodenal diseases (49 chronic gastritis, 19 gastric ulcer, 33 gastric cancer, and 76 duodenal ulcer), 94 of which contained pathological information (41 superficial gastritis, 24 intestinal hyperplasia, and 29 gastric adenocarcinoma). The full-length amplification of babA, oipA, sabA, and homB genes was acquired and sequenced. Then, the genetic polymorphism was analyzed to compare with the reference strains from the GenBank database. Functional status and cluster analysis were also performed to evaluate the impact of genetic polymorphism on disease outcome. The prevalence of babA, oipA, sabA, and homB genes were 91.5%, 100%, 94.0%, and 95.5%, respectively. The four OMP genes were characterized by genetic polymorphism and in the status of positive selection (Ka/Ks> 1). The proportion of strains with functional status on for oipA and sabA gene was 100% and 76.2%, respectively. The sequences of four OMP genes were mainly clustered together with the East Asian references. The four OMP genes were not different in patients with gastroduodenal diseases and pathologic changes (P > 0.05). H. pylori babA, oipA, sabA, and homB genes were common in the Chinese populations, but did not seem to be involved in the development of gastroduodenal diseases.

Indexed as

Helicobacter pyloriPolymorphism, GeneticAdhesins, BacterialBacterial Outer Membrane ProteinsBiomarkersChinaHumansStomach DiseasesVirulence FactorsAdhesins, BacterialBabA protein, Helicobacter pyloriBacterial Outer Membrane ProteinsBiomarkersHomB protein, Helicobacter pyloriOipA protein, Helicobacter pyloriSabA protein, Helicobacter pyloriVirulence FactorsGastroduodenal diseasesGene sequenceGenetic polymorphismHelicobacter pyloriOuter membrane proteinPhylogeny

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.