Evidence map›Paper›PMID 32219223›Full record

ArticleThe semantic Web--ISWC ... : ... International Semantic Web Conference ... proceedings. International Semantic Web Conference2017

The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments.

Rafael S Gonçalves, Martin J O'Connor, Marcos Martínez-Romero, Attila L Egyedi, Debra Willrett, John Graybeal, Mark A Musen

Abstract read
In one paragraph

Article in The semantic Web--ISWC ... : ... International Semantic Web Conference ... proceedings. International Semantic Web Conference, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. The FAIRSCAPE AI-readiness Framework for Biomedical Research.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Review
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  5. Article
  6. An approach to making life sciences FAIR-FAIR-DS as a tool for Aspergillus fumigatus.Database : the journal of biological databases and curation · 2025
    Article
  7. Article
  8. The text2term tool to map free-text descriptions of biomedical terms to ontologies.Database : the journal of biological databases and curation · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Rafael S GonçalvesStanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA.ORCID 0000-0003-1255-0125
Martin J O'ConnorStanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA.
Marcos Martínez-RomeroStanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA.
Attila L EgyediStanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA.
Debra WillrettStanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA.
John GraybealStanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA.
Mark A MusenStanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA.

Funding

STANFORD COMPOSITE(RMI)U54HG004028 · NHGRI · STANFORD UNIVERSITY · PI MUSEN, MARK A · 2005 to 2014
$36.2M
TrainingU54AI117925 · NIAID · STANFORD UNIVERSITY · PI MUSEN, MARK A · 2014 to 2018
$12.9M
NHGRI NIH HHS U54 HG004028NIAID NIH HHS U54 AI117925
6 · The paper itself

Abstract

The Center for Expanded Data Annotation and Retrieval (CEDAR) aims to revolutionize the way that metadata describing scientific experiments are authored. The software we have developed-the CEDAR Workbench-is a suite of Web-based tools and REST APIs that allows users to construct metadata templates, to fill in templates to generate high-quality metadata, and to share and manage these resources. The CEDAR Workbench provides a versatile, REST-based environment for authoring metadata that are enriched with terms from ontologies. The metadata are available as JSON, JSON-LD, or RDF for easy integration in scientific applications and reusability on the Web. Users can leverage our APIs for validating and submitting metadata to external repositories. The CEDAR Workbench is freely available and open-source.

Indexed as

MetadataMetadata authoringMetadata repositoryOntologies

Identifiers

PMID32219223
PMCPMC7098808

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.