Evidence map›Paper›PMID 32218711›Full record

ArticleNanobiotechnology : the journal at the intersection of nanotechnology, molecular biology, and biomedical sciences2007

Detection of human viral RNA via a combined fluorescence and SERS molecular beacon assay.

M Y Sha, S Penn, G Freeman, W E Doering

Abstract read
In one paragraph

Article in Nanobiotechnology : the journal at the intersection of nanotechnology, molecular biology, and biomedical sciences, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

M Y ShaOxonica Inc, 665 Clyde Avenue, Suite A, 94043 Mountain View, CA USA.
S PennOxonica Inc, 665 Clyde Avenue, Suite A, 94043 Mountain View, CA USA.
G FreemanOxonica Inc, 665 Clyde Avenue, Suite A, 94043 Mountain View, CA USA.
W E DoeringOxonica Inc, 665 Clyde Avenue, Suite A, 94043 Mountain View, CA USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A dual-mode molecular beacon on a multiplexed substrate has been developed and applied to the measurement of unlabeled human viral RNA. The detection system is based on a combined surface-enhanced Raman scattering (SERS) and fluorescent molecular beacon assay that is assembled on Nanobarcodes™ particles. In this assay, a molecular beacon probe terminated with a fluorescent Raman label dye is conjugated to the metallic Nanobarcodes™ particles. The molecular beacon probe is a single-stranded oligonucleotide that has been designed with a hairpin structure that holds the dye at 3'-end close to the particle surface when the probe is attached through a 5'-thiol group. In this configuration, the SERS spectrum of the label was obtained and its fluorescence quenched because the dye is in very close proximity to a noble metal surface with nanoscale features (Nanobarcodes™ particles). The SERS signal decreased and the fluorescence signal increased when target viral RNA was captured by this molecular beacon probe. In addition, a hepatitis C virus reverse transcriptase-polymerase chain reaction (HCV RT-PCR) product was detected using this dual-mode beacon. The development of a multiplexed, label-free assay system with the reassurance offered by detection of two distinctly separate signals offers significant benefits for rapid molecular diagnostics.

Indexed as

label-freemolecular beaconRNA detectionSERS beacon

Identifiers

PMID32218711
PMCPMC7091242

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.