Evidence map›Paper›PMID 32218378›Full record

ArticleMetabolites2020

Identifying Protein-metabolite Networks Associated with COPD Phenotypes.

Emily Mastej, Lucas Gillenwater, Yonghua Zhuang, Katherine A Pratte, Russell P Bowler, Katerina Kechris

Open access · goldAbstract read
In one paragraph

Article in Metabolites, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 33 citations in OpenAlex.

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  16. Effective Subject Representation based on Multi-omics Disease Networks using Graph Embedding.Proceedings. IEEE International Conference on Bioinformatics and Biomedicine · 2022
    Article
  17. sJIVE: Supervised Joint and Individual Variation Explained.Computational statistics & data analysis · 2022
    Article
  18. Air pollution, metabolites and respiratory health across the life-course.European respiratory review : an official journal of the European Respiratory Society · 2022
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Emily MastejComputational Bioscience Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Lucas GillenwaterNational Jewish Health, Denver 80206, CO, USA.
Yonghua ZhuangColorado School of Public Health, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Katherine A PratteNational Jewish Health, Denver 80206, CO, USA.
Russell P BowlerNational Jewish Health, Denver 80206, CO, USA.
Katerina KechrisColorado School of Public Health, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
National Jewish Health · USColorado School of Public Health · USUniversity of Colorado Anschutz Medical Campus · US

Funding

Genetic Epidemiology of COPDU01HL089897 · NHLBI · NATIONAL JEWISH HEALTH · PI CRAPO, JAMES D · 2007 to 2021
$56.9M
Genetic Epidemiology of COPDU01HL089856 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SILVERMAN, EDWIN K · 2007 to 2021
$20.7M
Biomarker of Lung Disease in African AmericansR01HL137995 · NHLBI · NATIONAL JEWISH HEALTH · PI BOWLER, RUSSELL PAUL, KECHRIS-MAYS, KATHERINA · 2018 to 2021
$3.4M
Addressing Sparsity in Metabolomics Data AnalysisU01CA235488 · NCI · UNIVERSITY OF COLORADO DENVER · PI GHOSH, DEBASHIS, KECHRIS-MAYS, KATHERINA · 2018 to 2021
$1.8M
Sphingolipids and inflammatory biomarkers of COPD progression in healthy smokersR01HL129937 · NHLBI · NATIONAL JEWISH HEALTH · PI BOWLER, RUSSELL PAUL · 2015 to 2017
$1.3M
Omics Data Integration to Identify Disease Pathways in COPDR21HL140376 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI BANAEI-KASHANI, FARNOUSH, BOWLER, RUSSELL PAUL · 2017 to 2018
$235k
NCI NIH HHS U01 CA235488NHLBI NIH HHS R01 HL129937NHLBI NIH HHS R01HL129937NHLBI NIH HHS R01 HL137995NHLBI NIH HHS R01HL137995NHLBI NIH HHS R21 HL140376NHLBI NIH HHS R21HL140376NHLBI NIH HHS U01 HL089856NHLBI NIH HHS U01 HL089897
6 · The paper itself

Abstract

Chronic obstructive pulmonary disease (COPD) is a disease in which airflow obstruction in the lung makes it difficult for patients to breathe. Although COPD occurs predominantly in smokers, there are still deficits in our understanding of the additional risk factors in smokers. To gain a deeper understanding of the COPD molecular signatures, we used Sparse Multiple Canonical Correlation Network (SmCCNet), a recently developed tool that uses sparse multiple canonical correlation analysis, to integrate proteomic and metabolomic data from the blood of 1008 participants of the COPDGene study to identify novel protein-metabolite networks associated with lung function and emphysema. Our aim was to integrate -omic data through SmCCNet to build interpretable networks that could assist in the discovery of novel biomarkers that may have been overlooked in alternative biomarker discovery methods. We found a protein-metabolite network consisting of 13 proteins and 7 metabolites which had a -0.34 correlation (

Indexed as

COPDmetabolomicsmulti-omic networksproteomicsSmCCNet

Identifiers

PMID32218378
PMCPMC7241079
OpenAlexW3014057592

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.