Evidence map›Paper›PMID 32217750›Full record

ArticleScience (New York, N.Y.)2020

Transcription polymerase-catalyzed emergence of novel RNA replicons.

Nimit Jain, Lucas R Blauch, Michal R Szymanski, Rhiju Das, Sindy K Y Tang, Y Whitney Yin, Andrew Z Fire

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. The RNA Revolution in the Central Molecular Biology Dogma Evolution.International journal of molecular sciences · 2024
    Review
  9. Article
  10. Article
  11. Cellular roadmaps of viroid infection.Trends in microbiology · 2023
    Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Nimit JainDepartment of Pathology, Stanford University School of Medicine, Stanford, CA 94305, USA.ORCID 0000-0001-8759-2456
Lucas R BlauchDepartment of Mechanical Engineering, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0003-1517-0662
Michal R SzymanskiDepartment of Pharmacology and Toxicology, University of Texas Medical Branch, Galveston, TX 77555, USA.ORCID 0000-0001-9452-8508
Rhiju DasDepartment of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305, USA.ORCID 0000-0001-7497-0972
Sindy K Y TangDepartment of Mechanical Engineering, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0003-1465-2432
Y Whitney YinDepartment of Pharmacology and Toxicology, University of Texas Medical Branch, Galveston, TX 77555, USA.ORCID 0000-0001-7063-9385
Andrew Z FireDepartment of Pathology, Stanford University School of Medicine, Stanford, CA 94305, USA. afire@stanford.edu.ORCID 0000-0001-6217-8312
Stanford University · USThe University of Texas Medical Branch at Galveston · US

Funding

GENE REGULATION DURING EARLY DEVELOPMENT OF C. ELEGANSR01GM037706 · NIGMS · STANFORD UNIVERSITY · PI FIRE, ANDREW Z. · 1987 to 2018
$11.0M
Next-generation computational/chemical methods for complex RNA structuresR35GM122579 · NIGMS · STANFORD UNIVERSITY · PI Rhiju Das · 2017 to 2026
$7.2M
Graduate Training Program in BiotechnologyT32GM008412 · NIGMS · STANFORD UNIVERSITY · PI COCHRAN, JENNIFER R · 1991 to 2020
$5.5M
Cellular Response to Genetic ChangeR35GM130366 · NIGMS · STANFORD UNIVERSITY · PI ANDREW Z. FIRE · 2019 to 2026
$4.8M
Structural Basis for Antiviral Drug Mitochondrial ToxicityR01AI134611 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI YIN, YUHUI · 2018 to 2022
$2.0M
Dissecting Dual Function of Pol gamma in mtDNA Replication and Oxidative Damage RepairR01GM110591 · NIGMS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI YIN, YUHUI · 2014 to 2018
$1.3M
NIAID NIH HHS R01 AI134611NIGMS NIH HHS R01 GM037706NIGMS NIH HHS R01 GM110591NIGMS NIH HHS R35 GM122579NIGMS NIH HHS R35 GM130366NIGMS NIH HHS T32 GM008412
6 · The paper itself

Abstract

Transcription polymerases can exhibit an unusual mode of regenerating certain RNA templates from RNA, yielding systems that can replicate and evolve with RNA as the information carrier. Two classes of pathogenic RNAs (hepatitis delta virus in animals and viroids in plants) are copied by host transcription polymerases. Using in vitro RNA replication by the transcription polymerase of T7 bacteriophage as an experimental model, we identify hundreds of new replicating RNAs, define three mechanistic hallmarks of replication (subterminal de novo initiation, RNA shape-shifting, and interrupted rolling-circle synthesis), and describe emergence from DNA seeds as a mechanism for the origin of novel RNA replicons. These results inform models for the origins and replication of naturally occurring RNA genetic elements and suggest a means by which diverse RNA populations could be propagated as hereditary material in cellular contexts.

Indexed as

RepliconTranscription, GeneticBiocatalysisDNA-Directed RNA PolymerasesRNAViral Proteinsbacteriophage T7 RNA polymeraseDNA-Directed RNA PolymerasesRNAViral Proteins

Identifiers

PMID32217750
PMCPMC7445081
OpenAlexW3013741072

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.