Evidence map›Paper›PMID 32214109›Full record

ArticleScientific reports2020

Transcriptome analysis uncovers the gene expression profile of salt-stressed potato (Solanum tuberosum L.).

Qing Li, Yuzhi Qin, Xinxi Hu, Guangcun Li, Hongying Ding, Xingyao Xiong, Wanxing Wang

Abstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. Article
  2. Integrated omics and functional validation identify StGDPD1 as a central regulator of salt stress tolerance in potato.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  3. Article
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  6. Plastic responses to past environments shape adaptation to novel selection pressures.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Transcriptome Analysis of Potato Leaves under Oxidative Stress.International journal of molecular sciences · 2024
    Article
  15. Article
  16. Article
  17. Article
  18. Molecular analysis of the reactions inFrontiers in plant science · 2024
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Qing LiInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Root and Tuber Crops, Ministry of Agriculture and Rural Affairs, Beijing, 100081, China.
Yuzhi QinCollege of Horticulture, Hunan Agricultural University/Hunan Provincial Engineering Research Center for Potatoes/Southern Regional Collaborative Innovation Center for Grain and Oil Crops in China, Changsha, 410128, China.
Xinxi HuCollege of Horticulture, Hunan Agricultural University/Hunan Provincial Engineering Research Center for Potatoes/Southern Regional Collaborative Innovation Center for Grain and Oil Crops in China, Changsha, 410128, China.
Guangcun LiInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Root and Tuber Crops, Ministry of Agriculture and Rural Affairs, Beijing, 100081, China.
Hongying DingCollege of Horticulture, Hunan Agricultural University/Hunan Provincial Engineering Research Center for Potatoes/Southern Regional Collaborative Innovation Center for Grain and Oil Crops in China, Changsha, 410128, China.
Xingyao XiongInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Root and Tuber Crops, Ministry of Agriculture and Rural Affairs, Beijing, 100081, China. xiongxingyao@caas.cn.
Wanxing WangInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Improvement of Root and Tuber Crops, Ministry of Agriculture and Rural Affairs, Beijing, 100081, China. wangwanxing@caas.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Potato (Solanum tuberosum L.) is an important staple food worldwide. However, its growth has been heavily suppressed by salt stress. The molecular mechanisms of salt tolerance in potato remain unclear. It has been shown that the tetraploid potato Longshu No. 5 is a salt-tolerant genotype. Therefore, in this study we conducted research to identify salt stress response genes in Longshu No. 5 using a NaCl treatment and time-course RNA sequencing. The total number of differentially expressed genes (DEGs) in response to salt stress was 5508. Based on Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis, it was found that DEGs were significantly enriched in the categories of nucleic acid binding, transporter activity, ion or molecule transport, ion binding, kinase activity and oxidative phosphorylation. Particularly, the significant differential expression of encoding ion transport signaling genes suggests that this signaling pathway plays a vital role in salt stress response in potato. Finally, the DEGs in the salt response pathway were verified by Quantitative real-time PCR (qRT-PCR). These results provide valuable information on the salt tolerance of molecular mechanisms in potatoes, and establish a basis for breeding salt-tolerant cultivars.

Indexed as

DroughtsGene Expression ProfilingGene Expression Regulation, PlantGene OntologyHigh-Throughput Nucleotide SequencingMicroarray AnalysisPlant ProteinsSalt StressSalt ToleranceSequence Analysis, RNASolanum tuberosumTranscriptomePlant Proteins

Identifiers

PMID32214109
PMCPMC7096413

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.