Evidence map›Paper›PMID 32213253›Full record

ArticleMicrobial genomics2020

Deciphering the role of insertion sequences in the evolution of bacterial epidemic pathogens with

Charlotte Couchoud, Xavier Bertrand, Benoit Valot, Didier Hocquet

Open access · goldAbstract read
In one paragraph

Article in Microbial genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Pathogens (Basel, Switzerland) · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Charlotte CouchoudLaboratoire d'Hygiène Hospitalière, Centre Hospitalier Régional Universitaire, Besançon, France.
Xavier BertrandLaboratoire d'Hygiène Hospitalière, Centre Hospitalier Régional Universitaire, Besançon, France.
Benoit ValotUMR CNRS 6249 Chrono-environnement, Université de Bourgogne Franche-Comté, Besançon, France.
Didier HocquetLaboratoire d'Hygiène Hospitalière, Centre Hospitalier Régional Universitaire, Besançon, France.
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Next-generation sequencing (NGS) is now widely used in microbiology to explore genome evolution and the structure of pathogen outbreaks. Bioinformatics pipelines readily detect single-nucleotide polymorphisms or short indels. However, bacterial genomes also evolve through the action of small transposable elements called insertion sequences (ISs), which are difficult to detect due to their short length and multiple repetitions throughout the genome. We designed

Indexed as

DNA Transposable ElementsAnti-Bacterial AgentsBacteriaBacterial InfectionsComputational BiologyDatabases, GeneticDisease OutbreaksDrug Resistance, BacterialEvolution, MolecularGenome, BacterialHigh-Throughput Nucleotide SequencingHumansMutagenesis, InsertionalSequence Analysis, DNASoftwareAnti-Bacterial AgentsDNA Transposable Elementsbacterial evolutioninsertion sequenceoutbreakwhole-genome sequencing

Identifiers

PMID32213253
PMCPMC7371109
OpenAlexW3013670520

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.