Evidence map›Paper›PMID 32212320›Full record

ArticleMicrobiologyOpen2020

Insights into gene regulation of the halovirus His2 infecting Haloarcula hispanica.

Sonny T M Lee, Jiun-Yan Ding, Pei-Wen Chiang, Mike Dyall-Smith, Sen-Lin Tang

Open access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. ICTV Virus Taxonomy Profile:The Journal of general virology · 2022
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 4 countries.

Sonny T M LeeDivision of Biology, Kansas State University, Manhattan, Kansas, United States.ORCID 0000-0001-8073-989X
Jiun-Yan DingBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Pei-Wen ChiangBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Mike Dyall-SmithComputational Biology Group, Max-Planck-Institute of Biochemistry, Martinsried, Germany.
Sen-Lin TangBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Biodiversity Research Center, Academia Sinica · TWKansas State University · USThe University of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene expression in Haloarcula hispanica cells infected with the gammapleolipovirus His2 was studied using a custom DNA microarray. Total RNA from cells sampled at 0, 1, 2, 3, and 4.5 hr postinfection was reverse-transcribed into labeled cDNA and hybridized to microarrays, revealing temporal and differential expression in both host and viral genes. His2 gene expression occurred in three main phases (early, middle, and late), and by 4.5 hr p.i. the majority of genes were actively transcribed, including those encoding the major structural proteins. Eighty host genes were differentially regulated ≥twofold postinfection, with most of them predicted to be involved in transport, translation, and metabolism. Differentially expressed host genes could also be grouped into early-, middle-, and late-expressed genes based on the timing of their up- and downregulation postinfection. The altered host transcriptional pattern suggests regulation by His2 infection, which may reprogram host metabolism to facilitate its own DNA replication and propagation. This study enhances the characterization of many hypothetical viral genes and provides insights into the interaction between His2 and its host.

Indexed as

Gene Expression RegulationArchaeal VirusesDNA ReplicationGene Expression ProfilingGenome, ArchaealGenome, ViralHaloarculaHost Microbial InteractionsOligonucleotide Array Sequence Analysisgene regulationhaloarchaeahalovirusinfectionmicroarraypleolipovirus

Identifiers

PMID32212320
PMCPMC7221443
OpenAlexW3013035696

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.