Evidence map›Paper›PMID 32211331›Full record

ArticleFrontiers in oncology2020

Integrative Analysis of Breast Cancer Cells Reveals an Epithelial-Mesenchymal Transition Role in Adaptation to Acidic Microenvironment.

Mehdi Sadeghi, Bryce Ordway, Ilyia Rafiei, Punit Borad, Bin Fang, John L Koomen, Chaomei Zhang, Sean Yoder, Joseph Johnson, Mehdi Damaghi

Open access · goldAbstract read
In one paragraph

Article in Frontiers in oncology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.

  1. Biomarkers of tumor invasiveness in proteomics (Review).International journal of oncology · 2020
    Pooled it
  2. The Association ofDiseases (Basel, Switzerland) · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Beyond Genetics: Metastasis as an Adaptive Response in Breast Cancer.International journal of molecular sciences · 2022
    Review
  10. Article
  11. Review
  12. Review
  13. Drug Repurposing by Tumor Tissue Editing.Frontiers in oncology · 2022
    Review
  14. Review
  15. Review
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Mehdi SadeghiDepartment of Cell and Molecular Biology, Faculty of Science, Semnan University, Semnan, Iran.
Bryce OrdwayDepartment of Cancer Physiology, Moffitt Cancer Center and Research Institute, Tampa, FL, United States.
Ilyia RafieiDepartment of Cell and Molecular Biology, Faculty of Science, Semnan University, Semnan, Iran.
Punit BoradDepartment of Cancer Physiology, Moffitt Cancer Center and Research Institute, Tampa, FL, United States.
Bin FangProteomics Core, Moffitt Cancer Center and Research Institute, Tampa, FL, United States.
John L KoomenProteomics Core, Moffitt Cancer Center and Research Institute, Tampa, FL, United States.
Chaomei ZhangMolecular Biology Core, Moffitt Cancer Center and Research Institute, Tampa, FL, United States.
Sean YoderMolecular Biology Core, Moffitt Cancer Center and Research Institute, Tampa, FL, United States.
Joseph JohnsonMicroscopy Core, Moffitt Cancer Center and Research Institute, Tampa, FL, United States.
Mehdi DamaghiDepartment of Cancer Physiology, Moffitt Cancer Center and Research Institute, Tampa, FL, United States.
Moffitt Cancer Center · USSemnan University · IR

Funding

TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI Christine O'Connell · 1998 to 2026
$93.5M
"Research Supplement to Promote Diversity in Health-Related Research", as part of Moffitt PS-OC, "Cancer as a Complex adaptive System"U54CA193489 · NCI · H. LEE MOFFITT CANCER CTR & RES INST · PI ANDERSON, ALEXANDER ROBERTSON ALLAN, GATENBY, ROBERT A · 2015 to 2020
$12.5M
Causes & Consequences of Acid pH in TumorsR01CA077575 · NCI · UNIVERSITY OF ARIZONA · PI GILLIES, ROBERT J. · 1999 to 2018
$8.5M
NCI NIH HHS P30 CA076292NCI NIH HHS R01 CA077575NCI NIH HHS U54 CA193489
6 · The paper itself

Abstract

Early ducts of breast tumors are unequivocally acidic. High rates of glycolysis combined with poor perfusion lead to a congestion of acidic metabolites in the tumor microenvironment, and pre-malignant cells must adapt to this acidosis to thrive. Adaptation to acidosis selects cancer cells that can thrive in harsh conditions and are capable of outgrowing the normal or non-adapted neighbors. This selection is usually accompanied by phenotypic change. Epithelial mesenchymal transition (EMT) is one of the most important switches correlated to malignant tumor cell phenotype and has been shown to be induced by tumor acidosis. New evidence shows that the EMT switch is not a binary system and occurs on a spectrum of transition states. During confirmation of the EMT phenotype, our results demonstrated a partial EMT phenotype in our acid-adapted cell population. Using RNA sequencing and network analysis we found 10 dysregulated network motifs in acid-adapted breast cancer cells playing a role in EMT. Our further integrative analysis of RNA sequencing and SILAC proteomics resulted in recognition of S100B and S100A6 proteins at both the RNA and protein level. Higher expression of S100B and S100A6 was validated

Indexed as

acid adaptationbreast cancerEMTS100 family proteinstumor microenvironment

Identifiers

PMID32211331
PMCPMC7076123
OpenAlexW3009228398

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.