Evidence map›Paper›PMID 32209431›Full record

ArticleCell host & microbe2020

Rewilding Nod2 and Atg16l1 Mutant Mice Uncovers Genetic and Environmental Contributions to Microbial Responses and Immune Cell Composition.

Jian-Da Lin, Joseph C Devlin, Frank Yeung, Caroline McCauley, Jacqueline M Leung, Ying-Han Chen, Alex Cronkite, Christina Hansen, Charlotte Drake-Dunn, Kelly V Ruggles and 3 more

Open access · bronzeAbstract readComment
In one paragraph

Article in Cell host & microbe, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
5.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 88 citations in OpenAlex.

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  15. Ecology and evolution · 2024
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  17. Competitive fungal commensalism mitigates candidiasis pathology.The Journal of experimental medicine · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Jian-Da LinDepartment of Microbiology, NYU Grossman School of Medicine, New York University School of Medicine, New York, NY 10016, USA; Laboratory of Parasitic Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
Joseph C DevlinDepartment of Microbiology, NYU Grossman School of Medicine, New York University School of Medicine, New York, NY 10016, USA; Sackler Institute of Graduate Biomedical Sciences, NYU Grossman School of Medicine, New York University, New York, NY 10016, USA; Institute of Systems Genetics, NYU Grossman School of Medicine, New York University School of Medicine, New York, NY 10016, USA.
Frank YeungSackler Institute of Graduate Biomedical Sciences, NYU Grossman School of Medicine, New York University, New York, NY 10016, USA; Kimmel Center for Biology and Medicine at the Skirball Institute, NYU Grossman School of Medicine, New York University School of Medicine, New York, NY 10016, USA.
Caroline McCauleyDepartment of Microbiology, NYU Grossman School of Medicine, New York University School of Medicine, New York, NY 10016, USA.
Jacqueline M LeungDepartment of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA.
Ying-Han ChenKimmel Center for Biology and Medicine at the Skirball Institute, NYU Grossman School of Medicine, New York University School of Medicine, New York, NY 10016, USA.
Alex CronkiteDepartment of Microbiology, NYU Grossman School of Medicine, New York University School of Medicine, New York, NY 10016, USA; Kimmel Center for Biology and Medicine at the Skirball Institute, NYU Grossman School of Medicine, New York University School of Medicine, New York, NY 10016, USA.
Christina HansenDepartment of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA.
Charlotte Drake-DunnKimmel Center for Biology and Medicine at the Skirball Institute, NYU Grossman School of Medicine, New York University School of Medicine, New York, NY 10016, USA.
Kelly V RugglesDivision of Translational Medicine, Department of Medicine, NYU Grossman School of Medicine, New York University School of Medicine, New York, NY 10016, USA; Institute of Systems Genetics, NYU Grossman School of Medicine, New York University School of Medicine, New York, NY 10016, USA.
Ken CadwellDepartment of Microbiology, NYU Grossman School of Medicine, New York University School of Medicine, New York, NY 10016, USA; Kimmel Center for Biology and Medicine at the Skirball Institute, NYU Grossman School of Medicine, New York University School of Medicine, New York, NY 10016, USA; Division of Gastroenterology and Hepatology, Department of Medicine, New York University Langone Health, New York, NY 10016, USA. Electronic address: Ken.Cadwell@med.nyu.edu.
Andrea L GrahamDepartment of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA. Electronic address: algraham@princeton.edu.
P'ng LokeDepartment of Microbiology, NYU Grossman School of Medicine, New York University School of Medicine, New York, NY 10016, USA; Laboratory of Parasitic Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA. Electronic address: Png.Loke@nih.gov.
New York University · USPrinceton University · USNational Institute of Allergy and Infectious Diseases · USNational Institutes of Health · US

Funding

Project-005UL1TR001445 · NCATS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BREDELLA, MIRIAM ANTOINETTE, HOCHMAN, JUDITH S · 2015 to 2025
$103.5M
Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
Molecular Regulation of Atherosclerosis Regression - RenewalR01HL084312 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI FISHER, EDWARD A · 2006 to 2024
$11.4M
Diabetes, Digestive, and Kidney Diseases Extramural ResearchR01DK093668 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Ken Hashigiwa Cadwell · 2011 to 2026
$7.3M
Alternatively activated macrophages during type 2 immune responsesZIAAI001256 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI LOKE, P'NG · 2020 to 2025
$6.1M
Regulation of mucosal immune responses by helminth infectionsZIAAI001255 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI LOKE, P'NG · 2020 to 2025
$6.1M
Redefining the role of autophagy in bacterial diseaseR01AI121244 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Ken Hashigiwa Cadwell · 2017 to 2026
$5.6M
The role of autophagy gene Atg16L1 in allogeneic hematopoietic stem cell transplantation - Resubmission - 1R01HL123340 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CADWELL, KEN HASHIGIWA, VAN DEN BRINK, MARCEL R M · 2015 to 2022
$5.2M
Training Program in Immunology and Inflammation.T32AI100853 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Susan Ruth Schwab · 2012 to 2026
$4.5M
Mechanisms of MRSA intestinal colonizationR01AI140754 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SHOPSIN, BO · 2020 to 2024
$3.5M
Interactions between helminth colonization and the gut microbiotaR01AI130945 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CADWELL, KEN HASHIGIWA · 2018 to 2022
$3.3M
Microbial triggers and molecular mechanisms of Th17 mediated airway inflammation-Resubmission-1R01HL125816 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KORALOV, SERGEI BORISOVICH · 2015 to 2019
$3.3M
Intramural NIH HHS Z99 AI999999Intramural NIH HHS ZIA AI001255Intramural NIH HHS ZIA AI001256NCATS NIH HHS UL1 TR001445NCI NIH HHS P30 CA016087NHLBI NIH HHS R01 HL084312NHLBI NIH HHS R01 HL123340NHLBI NIH HHS R01 HL125816NIAID NIH HHS R01 AI121244NIAID NIH HHS R01 AI130945NIAID NIH HHS R01 AI133977NIAID NIH HHS R01 AI140754NIAID NIH HHS T32 AI100853NIDDK NIH HHS F30 DK122698NIDDK NIH HHS R01 DK093668NIDDK NIH HHS R01 DK103788NIH HHS S10 OD018338
6 · The paper itself

Abstract

The relative contributions of genetic and environmental factors to variation in immune responses are poorly understood. Here, we performed a phenotypic analysis of immunological parameters in laboratory mice carrying susceptibility genes implicated in inflammatory bowel disease (IBD) (Nod2 and Atg16l1) upon exposure to environmental microbes. Mice were released into an outdoor enclosure (rewilded) and then profiled for immune responses in the blood and lymph nodes. Variations of immune cell populations were largely driven by the environment, whereas cytokine production elicited by microbial antigens was more affected by the genetic mutations. We identified transcriptional signatures in the lymph nodes associated with differences in T cell populations. Subnetworks associated with responses against Clostridium perfringens, Candida albicans, and Bacteroides vulgatus were also coupled with rewilding. Therefore, exposing laboratory mice with genetic mutations to a natural environment uncovers different contributions to variations in microbial responses and immune cell composition.

Indexed as

Inflammatory Bowel DiseasesAnimalsAutophagy-Related ProteinsBacteroidesCarrier ProteinsEnvironmentMiceAtg16l1 protein, mouseAutophagy-Related ProteinsCarrier Proteinsimmune variationinflammatory bowel diseasemachine learning modelmulti-omic data integrationrewilded mice

Identifiers

PMID32209431
PMCPMC7228860
OpenAlexW3013061863

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.