Evidence map›Paper›PMID 32209057›Full record

ArticleBMC medical genetics2020

Novel variants underlying autosomal recessive intellectual disability in Pakistani consanguineous families.

Muhammad Ilyas, Stephanie Efthymiou, Vincenzo Salpietro, Nuzhat Noureen, Faisal Zafar, Sobiah Rauf, Asif Mir, Henry Houlden

Open access · goldAbstract readCase Reports
In one paragraph

Article in BMC medical genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. HomozygousThe Yale journal of biology and medicine · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Muhammad IlyasDepartment of Biological Sciences, International Islamic University Islamabad, Islamabad, 44000, Pakistan.
Stephanie EfthymiouDepartment of Neuromuscular Disorders, UCL Institute of Neurology, Queen Square, London, WC1N 3BG, UK.
Vincenzo SalpietroDepartment of Neuromuscular Disorders, UCL Institute of Neurology, Queen Square, London, WC1N 3BG, UK.
Nuzhat NoureenDepartment of Pediatric Neurology, Children's Hospital and Institute of Child Health, Multan, 60000, Pakistan.
Faisal ZafarDepartment of Pediatric Neurology, Children's Hospital and Institute of Child Health, Multan, 60000, Pakistan.
Sobiah RaufNational Center for Bioinformatics, Quaid-i-Azam University, Islamabad, Pakistan.
Asif MirDepartment of Biological Sciences, International Islamic University Islamabad, Islamabad, 44000, Pakistan. asif.mir@iiu.edu.pk.
Henry HouldenDepartment of Neuromuscular Disorders, UCL Institute of Neurology, Queen Square, London, WC1N 3BG, UK.
International Islamic University, Islamabad · PKUniversity College London · GBNational Hospital for Neurology and Neurosurgery · GBQuaid-i-Azam University · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIntellectual disability (ID) is both a clinically diverse and genetically heterogeneous group of disorder, with an onset of cognitive impairment before the age of 18 years. ID is characterized by significant limitations in intellectual functioning and adaptive behaviour. The identification of genetic variants causing ID and neurodevelopmental disorders using whole-exome sequencing (WES) has proven to be successful. So far more than 1222 primary and 1127 candidate genes are associated with ID.

methodsTo determine pathogenic variants causative of ID in three unrelated consanguineous Pakistani families, we used a combination of WES, homozygosity-by-descent mapping, de-deoxy sequencing and bioinformatics analysis.

resultsRare pathogenic single nucleotide variants identified by WES which passed our filtering strategy were confirmed by traditional Sanger sequencing and segregation analysis. Novel and deleterious variants in VPS53, GLB1, and MLC1, genes previously associated with variable neurodevelopmental anomalies, were found to segregate with the disease in the three families.

conclusionsThis study expands our knowledge on the molecular basis of ID as well as the clinical heterogeneity associated to different rare genetic causes of neurodevelopmental disorders. This genetic study could also provide additional knowledge to help genetic assessment as well as clinical and social management of ID in Pakistani families.

Indexed as

ConsanguinityPolymorphism, Geneticbeta-GalactosidaseChildChild, PreschoolExome SequencingFamilyFemaleGenes, RecessiveGenetic HeterogeneityGenetic TestingHomozygoteHumansIntellectual DisabilityMaleMembrane Proteinsbeta-GalactosidaseGLB1 protein, humanMembrane ProteinsMLC1 protein, humanVesicular Transport ProteinsVPS53 protein, humanGLB1 geneIntellectual disabilityMLC1 geneVPS53 geneWhole exome sequencing

Identifiers

PMID32209057
PMCPMC7092478
OpenAlexW3013600361

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.