Evidence map›Paper›PMID 32206713›Full record

ArticleScience advances2020

Recapitulating complex biological signaling environments using a multiplexed, DNA-patterning approach.

Olivia J Scheideler, Chun Yang, Molly Kozminsky, Kira I Mosher, Roberto Falcón-Banchs, Emma C Ciminelli, Andrew W Bremer, Sabrina A Chern, David V Schaffer, Lydia L Sohn

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. DNA-programmed cell assembly: from cells, tissues to organoids.Frontiers in bioengineering and biotechnology · 2025
    Review
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  5. Article
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  9. Article
  10. DynamicNano letters · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Simple, Affordable, and Modular Patterning of Cells using DNA.Journal of visualized experiments : JoVE · 2021
    Article
  18. Review
  19. Guiding Cell Network Assembly using Shape-Morphing Hydrogels.Advanced materials (Deerfield Beach, Fla.) · 2020
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Olivia J ScheidelerUC Berkeley-UC San Francisco Graduate Program in Bioengineering, University of California, Berkeley, 306 Stanley Hall, Berkeley, CA 94720, USA.ORCID 0000-0001-9366-6992
Chun YangDepartment of Bioengineering, University of California, Berkeley, 306 Stanley Hall, Berkeley, CA 94720, USA.ORCID 0000-0002-7213-1523
Molly KozminskyCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, 174 Stanley Hall, Berkeley, CA 94720, USA.ORCID 0000-0001-7040-1641
Kira I MosherCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, 174 Stanley Hall, Berkeley, CA 94720, USA.ORCID 0000-0002-3041-3186
Roberto Falcón-BanchsUC Berkeley-UC San Francisco Graduate Program in Bioengineering, University of California, Berkeley, 306 Stanley Hall, Berkeley, CA 94720, USA.
Emma C CiminelliDepartment of Bioengineering, University of California, Berkeley, 306 Stanley Hall, Berkeley, CA 94720, USA.
Andrew W BremerUC Berkeley-UC San Francisco Graduate Program in Bioengineering, University of California, Berkeley, 306 Stanley Hall, Berkeley, CA 94720, USA.
Sabrina A ChernDepartment of Physics, Harvard University, 17 Oxford Street, Cambridge, MA 02138, USA.
David V SchafferUC Berkeley-UC San Francisco Graduate Program in Bioengineering, University of California, Berkeley, 306 Stanley Hall, Berkeley, CA 94720, USA.ORCID 0000-0002-9625-0121
Lydia L SohnUC Berkeley-UC San Francisco Graduate Program in Bioengineering, University of California, Berkeley, 306 Stanley Hall, Berkeley, CA 94720, USA.ORCID 0000-0003-2195-2521
University of California, San Francisco · USQB3 · USUniversity of California, Berkeley · USHarvard University · US

Funding

A Label-Free, Point-of-Care Platform to Diagnose Acute Promyelocytic LeukemiaR01CA190843 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI FEUSNER, JAMES, SOHN, LYDIA L · 2015 to 2019
$1.6M
Isolating Circulating Tumor CellsR21CA182375 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI SOHN, LYDIA L · 2015 to 2017
$605k
Node-Pore Sensing for Cellular ScreeningR21EB019181 · NIBIB · UNIVERSITY OF CALIFORNIA BERKELEY · PI LUSTIG, MICHAEL, SOHN, LYDIA L · 2015 to 2016
$409k
DNA-Directed Micropatterning of Cells to Investigate Prostate Cancer Dormancy in the Bone MarrowF32CA243354 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI KOZMINSKY, MOLLY · 2019 to 2021
$195k
NCI NIH HHS F32 CA243354NCI NIH HHS R01 CA190843NCI NIH HHS R21 CA182375NIBIB NIH HHS R21 EB019181
6 · The paper itself

Abstract

Elucidating how the spatial organization of extrinsic signals modulates cell behavior and drives biological processes remains largely unexplored because of challenges in controlling spatial patterning of multiple microenvironmental cues in vitro. Here, we describe a high-throughput method that directs simultaneous assembly of multiple cell types and solid-phase ligands across length scales within minutes. Our method involves lithographically defining hierarchical patterns of unique DNA oligonucleotides to which complementary strands, attached to cells and ligands-of-interest, hybridize. Highlighting our method's power, we investigated how the spatial presentation of self-renewal ligand fibroblast growth factor-2 (FGF-2) and differentiation signal ephrin-B2 instruct single adult neural stem cell (NSC) fate. We found that NSCs have a strong spatial bias toward FGF-2 and identified an unexpected subpopulation exhibiting high neuronal differentiation despite spatially occupying patterned FGF-2 regions. Overall, our broadly applicable, DNA-directed approach enables mechanistic insight into how tissues encode regulatory information through the spatial presentation of heterogeneous signals.

Indexed as

DNAModels, BiologicalSignal TransductionAnimalsBiomarkersCells, CulturedHumansLigandsNeuronsRatsBiomarkersDNALigands

Identifiers

PMID32206713
PMCPMC7080440
OpenAlexW3011516270

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.