Evidence map›Paper›PMID 32203519›Full record

ArticlePLoS genetics2020

Light affects tissue patterning of the hypocotyl in the shade-avoidance response.

Esther Botterweg-Paredes, Anko Blaakmeer, Shin-Young Hong, Bin Sun, Lorenzo Mineri, Valdeko Kruusvee, Yakun Xie, Daniel Straub, Delphine Ménard, Edouard Pesquet and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 4 countries.

Esther Botterweg-ParedesCopenhagen Plant Science Centre, University of Copenhagen, Thorvaldsensvej, Denmark.ORCID 0000-0002-4848-074X
Anko BlaakmeerCopenhagen Plant Science Centre, University of Copenhagen, Thorvaldsensvej, Denmark.ORCID 0000-0002-1834-2573
Shin-Young HongCopenhagen Plant Science Centre, University of Copenhagen, Thorvaldsensvej, Denmark.ORCID 0000-0003-3031-2753
Bin SunCopenhagen Plant Science Centre, University of Copenhagen, Thorvaldsensvej, Denmark.ORCID 0000-0003-1201-762X
Lorenzo MineriCopenhagen Plant Science Centre, University of Copenhagen, Thorvaldsensvej, Denmark.ORCID 0000-0003-2363-8878
Valdeko KruusveeCopenhagen Plant Science Centre, University of Copenhagen, Thorvaldsensvej, Denmark.ORCID 0000-0002-9553-400X
Yakun XieCentre for Plant Molecular Biology (ZMBP), University of Tübingen, Germany.ORCID 0000-0003-1943-9577
Daniel StraubQuantitative Biology Center (QBiC), University of Tübingen, Auf der Morgenstelle, Tübingen, Germany.ORCID 0000-0002-2553-0660
Delphine MénardArrhenius Laboratories, Department of Ecology, Environment and Plant Sciences (DEEP), Stockholm University, Stockholm, Sweden.
Edouard PesquetArrhenius Laboratories, Department of Ecology, Environment and Plant Sciences (DEEP), Stockholm University, Stockholm, Sweden.ORCID 0000-0002-6959-3284
Stephan WenkelCopenhagen Plant Science Centre, University of Copenhagen, Thorvaldsensvej, Denmark.ORCID 0000-0001-5764-9423
University of Copenhagen · DKStockholm University · SEUniversity of Tübingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plants have evolved strategies to avoid shade and optimize the capture of sunlight. While some species are tolerant to shade, plants such as Arabidopsis thaliana are shade-intolerant and induce elongation of their hypocotyl to outcompete neighboring plants. We report the identification of a developmental module acting downstream of shade perception controlling vascular patterning. We show that Arabidopsis plants react to shade by increasing the number and types of water-conducting tracheary elements in the vascular cylinder to maintain vascular density constant. Mutations in genes affecting vascular patterning impair the production of additional xylem and also show defects in the shade-induced hypocotyl elongation response. Comparative analysis of the shade-induced transcriptomes revealed differences between wild type and vascular patterning mutants and it appears that the latter mutants fail to induce sets of genes encoding biosynthetic and cell wall modifying enzymes. Our results thus set the stage for a deeper understanding of how growth and patterning are coordinated in a dynamic environment.

Indexed as

LightArabidopsisArabidopsis ProteinsBody PatterningGene Expression Regulation, PlantHomeodomain ProteinsHypocotylPlant LeavesTranscription FactorsArabidopsis ProteinsHomeodomain ProteinsIFL1 protein, ArabidopsisKANADI protein, ArabidopsisTranscription FactorsWOX4 protein, Arabidopsis

Identifiers

PMID32203519
PMCPMC7153905
OpenAlexW3012936648

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.