Evidence map›Paper›PMID 32202503›Full record

ArticleJournal of medical Internet research2020

Learning Latent Space Representations to Predict Patient Outcomes: Model Development and Validation.

Subendhu Rongali, Adam J Rose, David D McManus, Adarsha S Bajracharya, Alok Kapoor, Edgard Granillo, Hong Yu

Abstract read
In one paragraph

Article in Journal of medical Internet research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Subendhu RongaliCollege of Information and Computer Sciences, University of Massachusetts Amherst, Amherst, MA, United States.ORCID 0000-0003-1000-6118
Adam J RoseSection of General Internal Medicine, Boston University School of Medicine, Boston, MA, United States.ORCID 0000-0001-8681-6155
David D McManusDepartment of Medicine, University of Massachusetts Medical School, Worcester, MA, United States.ORCID 0000-0002-9343-6203
Adarsha S BajracharyaDepartment of Medicine, University of Massachusetts Medical School, Worcester, MA, United States.ORCID 0000-0002-1691-0506
Alok KapoorDepartment of Medicine, University of Massachusetts Medical School, Worcester, MA, United States.ORCID 0000-0003-1300-7124
Edgard GranilloDepartment of Population and Quantitative Health Sciences, University of Massachusetts Medical School, Worcester, MA, United States.ORCID 0000-0001-5115-9722
Hong YuCollege of Information and Computer Sciences, University of Massachusetts Amherst, Amherst, MA, United States.ORCID 0000-0001-9263-5035

Funding

EHR Anticoagulants PharmacovigilanceR01HL125089 · NHLBI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI YU, HONG · 2015 to 2019
$4.9M
Detecting bleeding events using EHRs for prediction in AfibR01HL137794 · NHLBI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI MCMANUS, DAVID D., YU, HONG · 2018 to 2021
$3.3M
Systematic Assessment of Geriatric Elements in Atrial Fibrillation (SAGE-AF)R01HL126911 · NHLBI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI MCMANUS, DAVID D., SACZYNSKI, JANE STEELE · 2016 to 2019
$3.2M
Improving Suicide Prediction using NLP-Extracted Social Determinants of HealthR01MH125027 · NIMH · UNIVERSITY OF MASSACHUSETTS LOWELL · PI YU, HONG · 2020 to 2023
$3.1M
Smartwatch Monitoring for Atrial Fibrillation After StrokeR01HL137734 · NHLBI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI CHON, KI H, MCMANUS, DAVID D. · 2018 to 2021
$3.1M
Identifying Opioid Overdose Predictors using EHRsR01DA045816 · NIDA · UNIVERSITY OF MASSACHUSETTS LOWELL · PI BECKER, WILLIAM C, LI, WENJUN · 2018 to 2022
$3.0M
FHS-NEXT - Framingham Novel EXam using TechnologyR01HL141434 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI BENJAMIN, EMELIA J., MCMANUS, DAVID D. · 2019 to 2022
$2.5M
Novel Approach to Enhance Myocardial Performance and Improve Heart Failure OutcomeR01HL135129 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI HONG, CHARLES C · 2018 to 2021
$1.6M
Resource Curation and Evaluation for EHR Note ComprehensionR01LM012817 · NLM · UNIVERSITY OF MASSACHUSETTS LOWELL · PI YU, HONG · 2018 to 2020
$1.0M
NHLBI NIH HHS R01 HL125089NHLBI NIH HHS R01 HL126911NHLBI NIH HHS R01 HL135129NHLBI NIH HHS R01 HL137734NHLBI NIH HHS R01 HL137794NHLBI NIH HHS R01 HL141434NIDA NIH HHS R01 DA045816NIMH NIH HHS R01 MH125027NLM NIH HHS R01 LM012817
6 · The paper itself

Abstract

backgroundScalable and accurate health outcome prediction using electronic health record (EHR) data has gained much attention in research recently. Previous machine learning models mostly ignore relations between different types of clinical data (ie, laboratory components, International Classification of Diseases codes, and medications).

objectiveThis study aimed to model such relations and build predictive models using the EHR data from intensive care units. We developed innovative neural network models and compared them with the widely used logistic regression model and other state-of-the-art neural network models to predict the patient's mortality using their longitudinal EHR data.

methodsWe built a set of neural network models that we collectively called as long short-term memory (LSTM) outcome prediction using comprehensive feature relations or in short, CLOUT. Our CLOUT models use a correlational neural network model to identify a latent space representation between different types of discrete clinical features during a patient's encounter and integrate the latent representation into an LSTM-based predictive model framework. In addition, we designed an ablation experiment to identify risk factors from our CLOUT models. Using physicians' input as the gold standard, we compared the risk factors identified by both CLOUT and logistic regression models.

resultsExperiments on the Medical Information Mart for Intensive Care-III dataset (selected patient population: 7537) show that CLOUT (area under the receiver operating characteristic curve=0.89) has surpassed logistic regression (0.82) and other baseline NN models (<0.86). In addition, physicians' agreement with the CLOUT-derived risk factor rankings was statistically significantly higher than the agreement with the logistic regression model.

conclusionsOur results support the applicability of CLOUT for real-world clinical use in identifying patients at high risk of mortality.

Indexed as

Validation Studies as TopicAgedFemaleHumansMachine LearningMalePrognosisRisk Factorsablationneural networkspatient mortalitypredictive modeling

Identifiers

PMID32202503
PMCPMC7136840

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.