ArticlePhilosophical transactions of the Royal Society of London. Series B, Biological sciences2020
Linking regional shifts in microbial genome adaptation with surface ocean biogeochemistry.
Article in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- Article
- Proteome trait regulation of marine Synechococcus elemental stoichiometry under global change.The ISME journal · 2024Article
- Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies.The ISME journal · 2023Article
- Basin-scale biogeography of Prochlorococcus and SAR11 ecotype replication.The ISME journal · 2023Article
- Global Phylogeography of MarinemSystems · 2022Article
- Global Ocean Particulate Organic Phosphorus, Carbon, Oxygen for Respiration, and Nitrogen (GO-POPCORN).Scientific data · 2022Article
- Ecological modelling approaches for predicting emergent properties in microbial communities.Nature ecology & evolution · 2022Review
- Siderophores as an iron source for picocyanobacteria in deep chlorophyll maximum layers of the oligotrophic ocean.The ISME journal · 2022Article
- Environmental control of marine phytoplankton stoichiometry in the North Atlantic Ocean.Proceedings of the National Academy of Sciences of the United States of America · 2022Article
- Comparative Thermophysiology of MarineFrontiers in microbiology · 2022Article
- Global patterns and predictors of C:N:P in marine ecosystems.Communications earth & environment · 2022Article
- Functional responses of key marine bacteria to environmental change - toward genetic counselling for coastal waters.Frontiers in microbiology · 2022Article
- High spatial resolution global ocean metagenomes from Bio-GO-SHIP repeat hydrography transects.Scientific data · 2021Article
- Conceptual challenges in microbial community ecology.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020Article
- Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine Picocyanobacteria.Frontiers in microbiology · 2020Article
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Authors and funding
7 authors.
Funding
Abstract
Linking 'omics measurements with biogeochemical cycles is a widespread challenge in microbial community ecology. Here, we propose applying genomic adaptation as 'biosensors' for microbial investments to overcome nutrient stress. We then integrate this genomic information with a trait-based model to predict regional shifts in the elemental composition of marine plankton communities. We evaluated this approach using metagenomic and particulate organic matter samples from the Atlantic, Indian and Pacific Oceans. We find that our genome-based trait model significantly improves our prediction of particulate C : P (carbon : phosphorus) across ocean regions. Furthermore, we detect previously unrecognized ocean areas of iron, nitrogen and phosphorus stress. In many ecosystems, it can be very challenging to quantify microbial stress. Thus, a carefully calibrated genomic approach could become a widespread tool for understanding microbial responses to environmental changes and the biogeochemical outcomes. This article is part of the theme issue 'Conceptual challenges in microbial community ecology'.
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