Evidence map›Paper›PMID 32200415›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2020

Identification of a cytochrome P450 hydroxylase, CYP81E22, as a causative gene for the high sensitivity of soybean to herbicide bentazon.

Shin Kato, Yuko Yokota, Rintaro Suzuki, Yukiko Fujisawa, Takashi Sayama, Akito Kaga, Toyoaki Anai, Kunihiko Komatsu, Nobuhiko Oki, Akio Kikuchi and 1 more

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
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  4. A mutation of GRAS SCL14 gene confers moderate sensitivity to the herbicide bentazon in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 1 country.

Shin KatoTohoku Agricultural Research Center, National Agriculture and Food Research Organization (NARO), 297 Uenodai, Kariwano, Daisen, Akita, 019-2112, Japan.
Yuko YokotaInstitute of Crop Science, NARO, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8518, Japan.
Rintaro SuzukiAdvanced Analysis Center, NARO, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8602, Japan.
Yukiko FujisawaInstitute of Crop Science, NARO, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8518, Japan.
Takashi SayamaInstitute of Crop Science, NARO, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8518, Japan.
Akito KagaInstitute of Crop Science, NARO, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8518, Japan.
Toyoaki AnaiFaculty of Agriculture, Saga University, Saga, 840-8502, Japan.
Kunihiko KomatsuWestern Region Agricultural Research Center, NARO, 1-3-1 Senyu-cho, Zentsuji, Kagawa, 765-8508, Japan.
Nobuhiko OkiKyushu Okinawa Agricultural Research Center, NARO, 2421 Suya, Koshi, Kumamoto, 861-1192, Japan.
Akio KikuchiTohoku Agricultural Research Center, National Agriculture and Food Research Organization (NARO), 297 Uenodai, Kariwano, Daisen, Akita, 019-2112, Japan.
Masao IshimotoInstitute of Crop Science, NARO, 2-1-2 Kannondai, Tsukuba, Ibaraki, 305-8518, Japan. ishimoto@affrc.go.jp.
Institute of Crop Science · JPNational Agriculture and Food Research Organization · JPWestern Region Agricultural Research Center · JPAdvanced Analysis Center · JPKyushu Okinawa Agricultural Research Center · JPSaga University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageA frame shift invoked by a single-base deletion in the gene encoding a cytochrome P450 hydroxylase, CYP81E22, causes the loss of bentazon detoxification function in soybean. Bentazon is an effective herbicide in soybean cultivation applied at post-emergence stages for control of several broadleaf weeds. However, some soybean cultivars are highly sensitive to bentazon and are killed upon application. In this study, the gene related to the high sensitivity of soybean cultivars to bentazon was mapped to chromosome 16, and its location was narrowed down to a 257-kb region where three cytochrome P450 genes were located. In these genes, a single-base deletion of cytosine was detected in the coding region of Glyma.16G149300, CYP81E22, at + 1465 bp downstream from the translation start codon, leading to a frame shift in the open reading frame and creating a premature stop codon. This stop codon resulted in the loss of more than half of the P450, and consequently, the remaining molecule failed to form a functioning protein. This single-base deletion was common among the highly sensitive cultivars screened from the soybean mini-core collection and other previously reported highly sensitive cultivars. Furthermore, we screened plant lines from the targeting-induced local lesions in genomes library of the soybean cultivar Enrei based on a modelled 3D structure of CYP81E22. The lines with mutations in Glyma.16G149300 were highly sensitive to bentazon, which provides strong evidence that Glyma.16G149300 is the gene responsible for high sensitivity to bentazon.

Indexed as

BenzothiadiazinesHerbicidesAllelesChromosome MappingCodon, TerminatorCrosses, GeneticCytochrome P-450 Enzyme SystemDisease ResistanceFrameshift MutationGene DeletionGenotypeGlycine maxPlant LeavesPlant ProteinsbentazoneBenzothiadiazinesCodon, TerminatorCytochrome P-450 Enzyme SystemHerbicidesPlant Proteins

Identifiers

PMID32200415
OpenAlexW3012475858

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.