Evidence map›Paper›PMID 32198417›Full record

ArticleScientific reports2020

Enhanced purification coupled with biophysical analyses shows cross-β structure as a core building block for Streptococcus mutans functional amyloids.

Ana L Barran-Berdon, Sebastian Ocampo, Momin Haider, Joyce Morales-Aparicio, Gregory Ottenberg, Amy Kendall, Elena Yarmola, Surabhi Mishra, Joanna R Long, Stephen J Hagen and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. De Novo Autogenic Engineered Living Functional Materials.Advanced materials (Deerfield Beach, Fla.) · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Inhibitory effect ofFrontiers in microbiology · 2024
    Article
  7. Review
  8. Article
  9. Amyloid Fibrils Produced byInternational journal of molecular sciences · 2023
    Article
  10. Review
  11. Growth with Commensal Streptococci AltersJournal of dental research · 2023
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Ana L Barran-BerdonDepartment of Oral Biology, University of Florida, Gainesville, Florida, USA.
Sebastian OcampoDepartment of Oral Biology, University of Florida, Gainesville, Florida, USA.
Momin HaiderDepartment of Physics, University of Florida, Gainesville, Florida, USA.
Joyce Morales-AparicioDepartment of Oral Biology, University of Florida, Gainesville, Florida, USA.
Gregory OttenbergDepartment of Oral Biology, University of Florida, Gainesville, Florida, USA.
Amy KendallDepartment of Biological Sciences and Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, USA.
Elena YarmolaDepartment of Oral Biology, University of Florida, Gainesville, Florida, USA.
Surabhi MishraDepartment of Oral Biology, University of Florida, Gainesville, Florida, USA.
Joanna R LongDepartment of Biochemistry, University of Florida, Gainesville, Florida, USA.
Stephen J HagenDepartment of Physics, University of Florida, Gainesville, Florida, USA.
Gerald StubbsDepartment of Biological Sciences and Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, USA.
L Jeannine BradyDepartment of Oral Biology, University of Florida, Gainesville, Florida, USA. jbrady@dental.ufl.edu.
University of Florida · USVanderbilt University · US

Funding

Functional Amyloid Formation in Streptococcus mutansR01DE021789 · NIDCR · UNIVERSITY OF FLORIDA · PI BRADY, L. JEANNINE, LONG, JOANNA R · 2012 to 2021
$3.7M
NIDCR NIH HHS R01 DE021789
6 · The paper itself

Abstract

Streptococcus mutans is an etiologic agent of human dental caries that forms dental plaque biofilms containing functional amyloids. Three amyloidogenic proteins, P1, WapA, and Smu_63c were previously identified. C123 and AgA are naturally occurring amyloid-forming fragments of P1 and WapA, respectively. We determined that four amyloidophilic dyes, ThT, CDy11, BD-oligo, and MK-H4, differentiate C123, AgA, and Smu_63c amyloid from monomers, but non-specific binding to bacterial cells in the absence of amyloid precludes their utility for identifying amyloid in biofilms. Congo red-induced birefringence is a more specific indicator of amyloid formation and differentiates biofilms formed by wild-type S. mutans from a triple ΔP1/WapA/Smu_63c mutant with reduced biofilm forming capabilities. Amyloid accumulation is a late event, appearing in older S. mutans biofilms after 60 hours of growth. Amyloid derived from pure preparations of all three proteins is visualized by electron microscopy as mat-like structures. Typical amyloid fibers become evident following protease digestion to eliminate non-specific aggregates and monomers. Amyloid mats, similar in appearance to those reported in S. mutans biofilm extracellular matrices, are reconstituted by co-incubation of monomers and amyloid fibers. X-ray fiber diffraction of amyloid mats and fibers from all three proteins demonstrate patterns reflective of a cross-β amyloid structure.

Indexed as

AmyloidBiofilmsDental CariesDental PlaqueExtracellular MatrixExtracellular Polymeric Substance MatrixHumansProtein Structure, TertiaryStreptococcus mutansAmyloid

Identifiers

PMID32198417
PMCPMC7083922
OpenAlexW3011127806

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.