Evidence map›Paper›PMID 32198399›Full record

ArticleNature communications2020

Chromosome organization by a conserved condensin-ParB system in the actinobacterium Corynebacterium glutamicum.

Kati Böhm, Giacomo Giacomelli, Andreas Schmidt, Axel Imhof, Romain Koszul, Martial Marbouty, Marc Bramkamp

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
12.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 97 citations in OpenAlex.

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  19. SMC-based immunity against extrachromosomal DNA elements.Biochemical Society transactions · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Kati BöhmLudwig-Maximilians-Universität München, Fakultät Biologie, 82152, Planegg-Martinsried, Germany.
Giacomo GiacomelliLudwig-Maximilians-Universität München, Fakultät Biologie, 82152, Planegg-Martinsried, Germany.
Andreas SchmidtBiomedical Center, Protein Analysis Unit, Faculty of Medicine, Ludwig-Maximilians-Universität München, 82152, Planegg-Martinsried, Germany.
Axel ImhofBiomedical Center, Protein Analysis Unit, Faculty of Medicine, Ludwig-Maximilians-Universität München, 82152, Planegg-Martinsried, Germany.ORCID http://orcid.org/0000-0003-2993-8249
Romain KoszulInstitut Pasteur, Unité Régulation Spatiales des Génomes, UMR3525, CNRS, F-75015, Paris, France.ORCID http://orcid.org/0000-0002-3086-1173
Martial MarboutyInstitut Pasteur, Unité Régulation Spatiales des Génomes, UMR3525, CNRS, F-75015, Paris, France. martial.marbouty@pasteur.fr.
Marc BramkampLudwig-Maximilians-Universität München, Fakultät Biologie, 82152, Planegg-Martinsried, Germany. bramkamp@ifam.uni-kiel.de.
Ludwig-Maximilians-Universität München · DECentre National de la Recherche Scientifique · FRChristian-Albrechts-Universität zu Kiel · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Higher-order chromosome folding and segregation are tightly regulated in all domains of life. In bacteria, details on nucleoid organization regulatory mechanisms and function remain poorly characterized, especially in non-model species. Here, we investigate the role of DNA-partitioning protein ParB and SMC condensin complexes in the actinobacterium Corynebacterium glutamicum. Chromosome conformation capture reveals SMC-mediated long-range interactions around ten centromere-like parS sites clustered at the replication origin (oriC). At least one oriC-proximal parS site is necessary for reliable chromosome segregation. We use chromatin immunoprecipitation and photoactivated single-molecule localization microscopy to show the formation of distinct, parS-dependent ParB-nucleoprotein subclusters. We further show that SMC/ScpAB complexes, loaded via ParB at parS sites, mediate chromosomal inter-arm contacts (as previously shown in Bacillus subtilis). However, the MukBEF-like SMC complex MksBEFG does not contribute to chromosomal DNA-folding; instead, this complex is involved in plasmid maintenance and interacts with the polar oriC-tethering factor DivIVA. Our results complement current models of ParB-SMC/ScpAB crosstalk and show that some condensin complexes evolved functions that are apparently uncoupled from chromosome folding.

Indexed as

Adenosine TriphosphatasesBacillus subtilisBacterial ProteinsCentromereChromosomes, BacterialChromosome SegregationChromosome StructuresCorynebacterium glutamicumDNA, BacterialDNA-Binding ProteinsDNA PrimaseMultiprotein ComplexesNucleoproteinsReplication OriginAdenosine TriphosphatasesBacterial Proteinschromosome partition proteins, bacterialcondensin complexesDNA, BacterialDNA-Binding ProteinsDNA PrimaseMultiprotein ComplexesNucleoproteins

Identifiers

PMID32198399
PMCPMC7083940
OpenAlexW3011688172

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.