Evidence map›Paper›PMID 32197299›Full record

ArticleViruses2020

Metagenomic Detection of Two Vientoviruses in a Human Sputum Sample.

Fernando Lázaro-Perona, Elias Dahdouh, Sergio Román-Soto, Sonia Jiménez-Rodríguez, Carlos Rodríguez-Antolín, Fernando de la Calle, Alexander Agrifoglio, Francisco Javier Membrillo, Julio García-Rodríguez, Jesús Mingorance

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Correlation of Redondovirus andInternational journal of molecular sciences · 2023
    Article
  6. Review
  7. Article
  8. Article
  9. Viruses · 2021
    Article
  10. ICTV Virus Taxonomy Profile:The Journal of general virology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Fernando Lázaro-PeronaServicio de Microbiología, Hospital Universitario La Paz, Idipaz, 28046 Madrid, Spain.
Elias DahdouhServicio de Microbiología, Hospital Universitario La Paz, Idipaz, 28046 Madrid, Spain.ORCID 0000-0003-2309-4129
Sergio Román-SotoServicio de Microbiología, Hospital Universitario La Paz, Idipaz, 28046 Madrid, Spain.
Sonia Jiménez-RodríguezServicio de Microbiología, Hospital Universitario La Paz, Idipaz, 28046 Madrid, Spain.
Carlos Rodríguez-AntolínCancer Epigenetics Laboratory, Instituto de Genética Médica y Molecular (INGEMM), Hospital Universitario La Paz, 28046 Madrid, Spain.
Fernando de la CalleSección de Infecciosas and Unidad de Medicina Tropical y del Viajero, Servicio de Medicina Interna, Hospital Universitario La Paz, 28046 Madrid, Spain.
Alexander AgrifoglioUnidad de Medicina Intensiva, Hospital Universitario La Paz, 28046 Madrid, Spain.
Francisco Javier MembrilloCBRN & Infectious Diseases Unit, Hospital Central de la Defensa Gómez Ulla, 28047 Madrid, Spain.
Julio García-RodríguezServicio de Microbiología, Hospital Universitario La Paz, Idipaz, 28046 Madrid, Spain.
Jesús MingoranceServicio de Microbiología, Hospital Universitario La Paz, Idipaz, 28046 Madrid, Spain.ORCID 0000-0001-6173-5711
Hospital Universitario La Paz · ESHospital Central de la Defensa Gómez Ulla · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We used metagenomics to analyze one sputum sample from a patient with symptoms of a respiratory infection that yielded negative results for all pathogens tested. We detected two viral genomes that could be assembled and showed sequence similarity to redondoviruses, a recently described group within the CRESS-DNA viruses. One hundred sputum samples were screened for the presence of these viruses using specific primers. One sample was positive for the same two viruses, and another was positive for one of them. These findings raise questions about a possible role of redondoviruses in respiratory infections in humans.

Indexed as

Genome, ViralMetagenomicsDNA VirusesHumansPhylogenyRespiratory Tract InfectionsSputumViral ProteinsViral Proteinscircovirusesmetagenomicsredondovirusesrespiratory disease

Identifiers

PMID32197299
PMCPMC7150755
OpenAlexW3012208998

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.