Evidence map›Paper›PMID 32196086›Full record

ArticleGenome biology and evolution2020

Comparative and Evolutionary Genomics of Isolates Provide Insight into the Pathoadaptation of Aeromonas.

Emilie Talagrand-Reboul, Sophie M Colston, Joerg Graf, Brigitte Lamy, Estelle Jumas-Bilak

Open access · goldAbstract readComparative Study
In one paragraph

Article in Genome biology and evolution, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 28 citations in OpenAlex.

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  7. Isolation, Identification, and Characteristics ofPathogens (Basel, Switzerland) · 2025
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  8. Virulent and multidrug-resistant Aeromonas in aquatic environments of Kerala, India: potential risks to fish and humans.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2025
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  10. Phylogenomics of novel clones ofMicrobiology spectrum · 2024
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  11. Pathogens (Basel, Switzerland) · 2024
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  12. Analysis of globalMicrobial genomics · 2024
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  13. EmergingFrontiers in microbiology · 2024
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  14. Genomic Characterization ofAntibiotics (Basel, Switzerland) · 2023
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  15. Pathogens (Basel, Switzerland) · 2023
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  17. Hiding in Plain Sight: Characterization ofAntibiotics (Basel, Switzerland) · 2023
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  18. Comparative genome analyses of fiveMicrobial genomics · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Emilie Talagrand-ReboulÉquipe Pathogènes Hydriques Santé Environnements, UMR 5569 HSM, University of Montpellier, France.
Sophie M ColstonUS Naval Research Laboratory, National Academy of Sciences, National Research Council, Washington, District of Columbia.
Joerg GrafDepartment of Molecular and Cell Biology, University of Connecticut.
Brigitte LamyÉquipe Pathogènes Hydriques Santé Environnements, UMR 5569 HSM, University of Montpellier, France.
Estelle Jumas-BilakÉquipe Pathogènes Hydriques Santé Environnements, UMR 5569 HSM, University of Montpellier, France.
Université de Montpellier · FRInserm · FRNational Academy of Sciences · USUniversity of Connecticut · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aeromonads are ubiquitous aquatic bacteria that cause opportunistic infections in humans, but their pathogenesis remains poorly understood. A pathogenomic approach was undertaken to provide insights into the emergence and evolution of pathogenic traits in aeromonads. The genomes of 64 Aeromonas strains representative of the whole genus were analyzed to study the distribution, phylogeny, and synteny of the flanking sequences of 13 virulence-associated genes. The reconstructed evolutionary histories varied markedly depending on the gene analyzed and ranged from vertical evolution, which followed the core genome evolution (alt and colAh), to complex evolution, involving gene loss by insertion sequence-driven gene disruption, horizontal gene transfer, and paraphyly with some virulence genes associated with a phylogroup (aer, ser, and type 3 secretion system components) or no phylogroup (type 3 secretion system effectors, Ast, ExoA, and RtxA toxins). The general pathogenomic overview of aeromonads showed great complexity with diverse evolution modes and gene organization and uneven distribution of virulence genes in the genus; the results provided insights into aeromonad pathoadaptation or the ability of members of this group to emerge as pathogens. Finally, these findings suggest that aeromonad virulence-associated genes should be examined at the population level and that studies performed on type or model strains at the species level cannot be generalized to the whole species.

Indexed as

Adaptation, PhysiologicalBiological EvolutionGenome, BacterialAeromonasGenomicsGenotypeHumansPhenotypePhylogenyVirulenceVirulence FactorsVirulence FactorsAeromonasevolutiongenomesopportunistic pathogenspathoadaptationpathogenomics

Identifiers

PMID32196086
PMCPMC7250499
OpenAlexW3010930522

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.