Evidence map›Paper›PMID 32193476›Full record

ArticleScientific reports2020

Recombinant expression, characterization, and quantification in human cancer cell lines of the Anaplastic Large-Cell Lymphoma-characteristic NPM-ALK fusion protein.

Katerina Kourentzi, Mary Crum, Ujwal Patil, Ana Prebisch, Dimple Chavan, Binh Vu, Zihua Zeng, Dmitri Litvinov, Youli Zu, Richard C Willson

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Katerina KourentziDepartment of Chemical & Biomolecular Engineering, University of Houston, Houston, TX, 77204, USA. edkourentzi@uh.edu.
Mary CrumDepartment of Chemical & Biomolecular Engineering, University of Houston, Houston, TX, 77204, USA.
Ujwal PatilDepartment of Biology & Biochemistry, University of Houston, Houston, TX, 77204, USA.
Ana PrebischDepartment of Chemical & Biomolecular Engineering, University of Houston, Houston, TX, 77204, USA.
Dimple ChavanDepartment of Biology & Biochemistry, University of Houston, Houston, TX, 77204, USA.
Binh VuDepartment of Chemical & Biomolecular Engineering, University of Houston, Houston, TX, 77204, USA.
Zihua ZengDepartment of Pathology and Genomic Medicine, Houston Methodist Hospital, Houston, TX, USA.
Dmitri LitvinovDepartment of Electrical & Computer Engineering, University of Houston, Houston, TX, USA.
Youli ZuDepartment of Pathology and Genomic Medicine, Houston Methodist Hospital, Houston, TX, USA. yzu@houstonmethodist.org.
Richard C WillsonDepartment of Chemical & Biomolecular Engineering, University of Houston, Houston, TX, 77204, USA. willson@uh.edu.
University of Houston · USMethodist Hospital · USTecnológico de Monterrey · MX

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Fabien Delerue · 1985 to 2026
$290.8M
Tissue ResourceP50CA126752 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Leonid S Metelitsa · 2007 to 2026
$51.4M
Orbitrap Elite High-Resolution Mass Spectrometer for Proteomics and MetabolomicsS10OD012304 · OD · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI HAWKE, DAVID H · 2013 to 2013
$877k
Viral nanoparticles as ultrasensitive reporters in lateral-flow assaysR21AI111120 · NIAID · UNIVERSITY OF HOUSTON · PI WILLSON, RICHARD · 2015 to 2016
$414k
NCI NIH HHS P30 CA016672NCI NIH HHS P50 CA126752NIAID NIH HHS R21 AI111120NIH HHS S10 OD012304
6 · The paper itself

Abstract

Systemic anaplastic large cell lymphoma (ALCL) is an aggressive T-cell lymphoma most commonly seen in children and young adults. The majority of pediatric ALCLs are associated with the t(2;5)(p23;q35) translocation which fuses the Anaplastic Lymphoma Kinase (ALK) gene with the Nucleophosmin (NPM) gene. The NPM-ALK fusion protein is a constitutively-active tyrosine kinase, and plays a major role in tumor pathogenesis. In an effort to advance novel diagnostic approaches and the understanding of the function of this fusion protein in cancer cells, we expressed in E. coli, purified and characterized human NPM-ALK fusion protein to be used as a standard for estimating expression levels in cultured human ALCL cells, a key tool in ALCL pathobiology research. We estimated that NPM-ALK fusion protein is expressed at substantial levels in both Karpas 299 and SU-DHL-1 cells (ca. 4-6 million molecules or 0.5-0.7 pg protein per cell; based on our in-house developed NPM-ALK ELISA; LOD of 40 pM) as compared to the ubiquitous β-actin protein (ca. 64 million molecules or 4.5 pg per lymphocyte). We also compared NPM-ALK/ β-actin ratios determined by ELISA to those independently determined by two-dimensional electrophoresis and showed that the two methods are in good agreement.

Indexed as

Gene ExpressionActinsAdolescentCell Line, TumorChildElectrophoresis, Gel, Two-DimensionalEnzyme-Linked Immunosorbent AssayHumansLymphoma, Large-Cell, AnaplasticProtein-Tyrosine KinasesRecombination, GeneticTranslocation, GeneticYoung AdultActinsp80(NPM-ALK) proteinProtein-Tyrosine Kinases

Identifiers

PMID32193476
PMCPMC7081362
OpenAlexW3010901165

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.