Evidence map›Paper›PMID 32192426›Full record

ArticleBMC evolutionary biology2020

Multiple independent chromosomal fusions accompanied the radiation of the Antarctic teleost genus Trematomus (Notothenioidei:Nototheniidae).

Juliette Auvinet, Paula Graça, Agnès Dettai, Angel Amores, John H Postlethwait, H William Detrich, Catherine Ozouf-Costaz, Olivier Coriton, Dominique Higuet

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Juliette AuvinetSorbonne Université, CNRS, Université des Antilles, Evolution Paris Seine - Institut de Biologie Paris Seine (EPS - IBPS), 75005, Paris, France. juliette.auvinet7138@gmail.com.ORCID 0000-0001-5877-7355
Paula GraçaSorbonne Université, CNRS, Université des Antilles, Evolution Paris Seine - Institut de Biologie Paris Seine (EPS - IBPS), 75005, Paris, France.
Agnès DettaiInstitut de Systématique, Evolution, Biodiversité (ISYEB) - Muséum National d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, 43, rue Cuvier, 75231, Paris Cedex 05, France.
Angel AmoresInstitute of Neuroscience, Department of Biology, University of Oregon, Eugene, OR, 97403, USA.
John H PostlethwaitInstitute of Neuroscience, Department of Biology, University of Oregon, Eugene, OR, 97403, USA.ORCID 0000-0002-5476-2137
H William DetrichDepartment of Marine and Environmental Sciences, Marine Science Center, Northeastern University, Nahant, MA, 01908, USA.ORCID 0000-0002-0783-4505
Catherine Ozouf-CostazSorbonne Université, CNRS, Université des Antilles, Evolution Paris Seine - Institut de Biologie Paris Seine (EPS - IBPS), 75005, Paris, France.
Olivier CoritonInstitut National de Recherche pour l'agriculture, l'alimentation et l'environnement, INRAE, UMR1349 IGEPP, Molecular cytogenetics Platform, BP35327, F-35653, Le Rheu Cedex, France.
Dominique HiguetSorbonne Université, CNRS, Université des Antilles, Evolution Paris Seine - Institut de Biologie Paris Seine (EPS - IBPS), 75005, Paris, France. dominique.higuet@sorbonne-universite.fr.ORCID 0000-0002-7627-5305
Centre National de la Recherche Scientifique · FRNortheastern University · USUniversity of Oregon · USInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FR

Funding

Resources for Teleost Gene Duplicates and Human DiseaseR01OD011116 · OD · UNIVERSITY OF OREGON · PI POSTLETHWAIT, JOHN H. · 2012 to 2020
$5.4M
Developmental Mechanisms for the Evolution of Bone LossR01AG031922 · NIA · UNIVERSITY OF OREGON · PI POSTLETHWAIT, JOHN H. · 2008 to 2012
$2.4M
Advancing the Scientific Potential of Transcriptomics in Aquatic ModelsR24RR032670 · NCRR · UNIVERSITY OF OREGON · PI CRESKO, WILLIAM A, POSTLETHWAIT, JOHN H. · 2011 to 2011
$553k
National Science Foundation ANT-0944517National Science Foundation OPP-0132032National Science Foundation PLR-1247510National Science Foundation PLR-1444167National Science Foundation PLR-1543383NCRR NIH HHS R24 RR032670NIA NIH HHS R01 AG031922NIH HHS R01 OD011116
6 · The paper itself

Abstract

backgroundChromosomal rearrangements are thought to be an important driving force underlying lineage diversification, but their link to speciation continues to be debated. Antarctic teleost fish of the family Nototheniidae (Notothenioidei) diversified in a changing environmental context, which led to ecological, morphological, and genetic differentiation among populations. In addition, extensive chromosomal repatterning accompanied species divergence in several clades. The most striking karyotypic changes involved the recent species radiation (about 10 My) of the genus Trematomus, with chromosomal pair numbers ranging between 29 and 12. These dramatic reductions in chromosome number resulted mostly from large-scale chromosome fusions. Multiple centric and/or tandem fusions have been hypothesized in at least seven of the twelve recognized Trematomus species. To reconstruct their evolutionary history, we employed comparative cytogenomics (BAC-FISH and chromosome painting) to reveal patterns of interspecific chromosomal orthologies across several notothenioid clades.

resultsWe defined orthologous chromosomal segments of reference, termed Structural Units (SUs). SUs were identified in a total of 18 notothenioid species. We demonstrated for the first time that SUs were strongly conserved across every specimen examined, with chromosomal syntenies highlighting a paucity of intrachromosomal macro-rearrangements. Multiple independent fusions of these SUs were inferred in the Trematomus species, in contrast to the shared SU fusions in species of the sister lineage Notothenia.

conclusionsThe SU segments were defined units of chromosomal rearrangement in the entire family Nototheiidae, which diverged from the other notothenioid families 20 My ago. Some of the identified chromosomal syntenies within the SUs were even conserved in their closest relatives, the family Eleginopsidae. Comparing the timing of acquisition of the fusions in the closely related genera Notothenia and Trematomus of the nototheniid species family, we conclude that they exhibit distinct chromosomal evolutionary histories, which may be relevant to different speciation scenarios.

Indexed as

ChromosomesEvolution, MolecularAnimalsAntarctic RegionsChromosome PaintingCytogenetic AnalysisFemaleKaryotypingMalePerciformesPhylogenyPhylogeographySyntenyBAC-FISHChromosomal paintingChromosomal rearrangementsChromosomal structural unitsChromosomal syntenyNototheniidaeSpeciation

Identifiers

PMID32192426
PMCPMC7082932
OpenAlexW3012624646

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.