Evidence map›Paper›PMID 32192061›Full record

ArticleInternational journal of molecular sciences2020

Genome-Wide Association Mapping for Heat Stress Responsive Traits in Field Pea.

Endale G Tafesse, Krishna K Gali, V B Reddy Lachagari, Rosalind Bueckert, Thomas D Warkentin

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
7.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 52 citations in OpenAlex.

  1. Pooled it
  2. Review
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  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Heat stress tolerance in peas (Frontiers in plant science · 2022
    Review
  14. Review
  15. Article
  16. Genetic dissection of days to flowering via genome-wide association studies in Turkish common bean germplasm.Physiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. Legume Genetics and Biology: From Mendel's Pea to Legume Genomics.International journal of molecular sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Endale G TafesseDepartment of Plant Sciences, College of Agriculture and Bio-resources, University of Saskatchewan, Saskatoon, SK S7N 5A8, Canada.
Krishna K GaliDepartment of Plant Sciences, College of Agriculture and Bio-resources, University of Saskatchewan, Saskatoon, SK S7N 5A8, Canada.
V B Reddy LachagariAgriGenome Labs Pvt. Ltd., Hyderabad 500 078, India.ORCID 0000-0002-4708-7866
Rosalind BueckertDepartment of Plant Sciences, College of Agriculture and Bio-resources, University of Saskatchewan, Saskatoon, SK S7N 5A8, Canada.
Thomas D WarkentinDepartment of Plant Sciences, College of Agriculture and Bio-resources, University of Saskatchewan, Saskatoon, SK S7N 5A8, Canada.ORCID 0000-0003-3059-0606
University of Saskatchewan · CASciGenom Labs (India) · IN

Funding

Ministry of Agriculture - Saskatchewan naSaskatchewan Pulse Growers naWestern Grains Research Foundation na
6 · The paper itself

Abstract

Environmental stress hampers pea productivity. To understand the genetic basis of heat resistance, a genome-wide association study (GWAS) was conducted on six stress responsive traits of physiological and agronomic importance in pea, with an objective to identify the genetic loci associated with these traits. One hundred and thirty-five genetically diverse pea accessions from major pea growing areas of the world were phenotyped in field trials across five environments, under generally ambient (control) and heat stress conditions. Statistical analysis of phenotype indicated significant effects of genotype (G), environment (E), and G × E interaction for all traits. A total of 16,877 known high-quality SNPs were used for association analysis to determine marker-trait associations (MTA). We identified 32 MTAs that were consistent in at least three environments for association with the traits of stress resistance: six for chlorophyll concentration measured by a soil plant analysis development meter; two each for photochemical reflectance index and canopy temperature; seven for reproductive stem length; six for internode length; and nine for pod number. Forty-eight candidate genes were identified within 15 kb distance of these markers. The identified markers and candidate genes have potential for marker-assisted selection towards the development of heat resistant pea cultivars.

Indexed as

Chromosome MappingGenome-Wide Association StudyQuantitative Trait, HeritableQuantitative Trait LociEnvironmentGenetic MarkersGenome, PlantGenomicsGenotypeHeat-Shock ResponsePhenotypePisum sativumPlant DevelopmentPolymorphism, Single NucleotideWeatherGenetic Markerscandidate-genegenetic diversitygenotyping-by-sequencingGWASheat stressmarker-trait associationpea

Identifiers

PMID32192061
PMCPMC7139655
OpenAlexW3011118740

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.