Evidence map›Paper›PMID 32191846›Full record

ArticleCell2020

A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies.

Claire D McWhite, Ophelia Papoulas, Kevin Drew, Rachael M Cox, Viviana June, Oliver Xiaoou Dong, Taejoon Kwon, Cuihong Wan, Mari L Salmi, Stanley J Roux and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 110 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
110citing papers in PubMed, 2 pooled it
12.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

110 citing papers in PubMed, 2 syntheses or guidelines pooled it, 239 citations in OpenAlex.

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50 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 3 countries.

Claire D McWhiteDepartment of Molecular Biosciences, Center for Systems and Synthetic Biology, University of Texas, Austin, TX 78712, USA.
Ophelia PapoulasDepartment of Molecular Biosciences, Center for Systems and Synthetic Biology, University of Texas, Austin, TX 78712, USA.
Kevin DrewDepartment of Molecular Biosciences, Center for Systems and Synthetic Biology, University of Texas, Austin, TX 78712, USA.
Rachael M CoxDepartment of Molecular Biosciences, Center for Systems and Synthetic Biology, University of Texas, Austin, TX 78712, USA.
Viviana JuneDepartment of Molecular Biosciences, Center for Systems and Synthetic Biology, University of Texas, Austin, TX 78712, USA.
Oliver Xiaoou DongDepartment of Plant Pathology and The Genome Center, University of California, Davis, Davis, CA 95616, USA; Joint Bioenergy Institute, Emeryville, CA 94608, USA.
Taejoon KwonDepartment of Biomedical Engineering, School of Life Sciences, Ulsan National Institute of Science and Technology (UNIST), 50 UNIST-gil, Ulju-gun, Ulsan 44919, Republic of Korea.
Cuihong WanDepartment of Molecular Biosciences, Center for Systems and Synthetic Biology, University of Texas, Austin, TX 78712, USA; Hubei Key Lab of Genetic Regulation and Integrative Biology, School of Life Sciences, Central China Normal University, No. 152 Luoyu Road, Wuhan 430079, P.R. China.
Mari L SalmiDepartment of Molecular Biosciences, Center for Systems and Synthetic Biology, University of Texas, Austin, TX 78712, USA.
Stanley J RouxDepartment of Molecular Biosciences, Center for Systems and Synthetic Biology, University of Texas, Austin, TX 78712, USA.
Karen S BrowningDepartment of Molecular Biosciences, Center for Systems and Synthetic Biology, University of Texas, Austin, TX 78712, USA.
Z Jeffrey ChenDepartment of Molecular Biosciences, Center for Systems and Synthetic Biology, University of Texas, Austin, TX 78712, USA.
Pamela C RonaldDepartment of Plant Pathology and The Genome Center, University of California, Davis, Davis, CA 95616, USA; Joint Bioenergy Institute, Emeryville, CA 94608, USA.
Edward M MarcotteDepartment of Molecular Biosciences, Center for Systems and Synthetic Biology, University of Texas, Austin, TX 78712, USA. Electronic address: marcotte@icmb.utexas.edu.
The University of Texas at Austin · USJoint BioEnergy Institute · USCentral China Normal University · CNUlsan National Institute of Science and Technology · KR

Funding

Proteomics and model organism humanization to decode human geneticsR35GM122480 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI EDWARD M MARCOTTE · 2017 to 2026
$5.4M
Activation of immune receptor signaling by a sulfated peptideR01GM122968 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI RONALD, PAMELA C · 2017 to 2020
$2.1M
Developmental and Epigenetic Regulation of Hybrid VigorR01GM109076 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI LLOYD, ALAN M · 2017 to 2020
$1.3M
Discovery and characterization of novel ciliopathy protein complexesK99HD092613 · NICHD · UNIVERSITY OF TEXAS AT AUSTIN · PI DREW, KEVIN · 2017 to 2018
$200k
Proteomics of ciliopathy protein complexesF31GM123683 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI MCWHITE, CLAIRE D · 2017 to 2019
$70k
NICHD NIH HHS K99 HD092613NICHD NIH HHS L40 HD096554NIGMS NIH HHS F31 GM123683NIGMS NIH HHS R01 GM109076NIGMS NIH HHS R01 GM122968NIGMS NIH HHS R35 GM122480
6 · The paper itself

Abstract

Plants are foundational for global ecological and economic systems, but most plant proteins remain uncharacterized. Protein interaction networks often suggest protein functions and open new avenues to characterize genes and proteins. We therefore systematically determined protein complexes from 13 plant species of scientific and agricultural importance, greatly expanding the known repertoire of stable protein complexes in plants. By using co-fractionation mass spectrometry, we recovered known complexes, confirmed complexes predicted to occur in plants, and identified previously unknown interactions conserved over 1.1 billion years of green plant evolution. Several novel complexes are involved in vernalization and pathogen defense, traits critical for agriculture. We also observed plant analogs of animal complexes with distinct molecular assemblies, including a megadalton-scale tRNA multi-synthetase complex. The resulting map offers a cross-species view of conserved, stable protein assemblies shared across plant cells and provides a mechanistic, biochemical framework for interpreting plant genetics and mutant phenotypes.

Indexed as

Mass SpectrometryPlant ProteinsPlantsProtein Interaction MappingProtein Interaction MapsProteomicsPlant Proteinsco-fractionation mass spectrometry (CF-MS)comparative proteomicscross-linking mass spectrometry (CL-MS)evolutioninteraction-to-phenotypepathogen defenseplantsprotein complexesprotein interactions

Identifiers

PMID32191846
PMCPMC7297045
OpenAlexW3012443370

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.