Evidence map›Paper›PMID 32189378›Full record

ArticleChemistry (Weinheim an der Bergstrasse, Germany)2020

Increasing the Affinity of an O-Antigen Polysaccharide Binding Site in Shigella flexneri Bacteriophage Sf6 Tailspike Protein.

Sonja Kunstmann, Olof Engström, Marko Wehle, Göran Widmalm, Mark Santer, Stefanie Barbirz

Abstract read
In one paragraph

Article in Chemistry (Weinheim an der Bergstrasse, Germany), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Review
  3. Host Range Expansion ofJournal of virology · 2022
    Article
  4. Article
  5. Review
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sonja KunstmannPhysikalische Biochemie, Universität Potsdam, Karl-Liebknecht-Str. 24-25, 14476, Potsdam, Germany.ORCID http://orcid.org/0000-0001-8224-0953
Olof EngströmDepartment of Organic Chemistry, Arrhenius Laboratory, Stockholm University, 10691, Stockholm, Sweden.
Marko WehleTheory and Biosystems, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476, Potsdam, Germany.
Göran WidmalmDepartment of Organic Chemistry, Arrhenius Laboratory, Stockholm University, 10691, Stockholm, Sweden.ORCID http://orcid.org/0000-0001-8303-4481
Mark SanterTheory and Biosystems, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, 14476, Potsdam, Germany.
Stefanie BarbirzPhysikalische Biochemie, Universität Potsdam, Karl-Liebknecht-Str. 24-25, 14476, Potsdam, Germany.ORCID http://orcid.org/0000-0001-6101-9862

Funding

Deutsche Forschungsgemeinschaft BA4046/1-2Knut och Alice Wallenbergs StiftelseMarie Sklodowska-Curie grant agreement 713683Vetenskapsrådet 2017-03703
6 · The paper itself

Abstract

Broad and unspecific use of antibiotics accelerates spread of resistances. Sensitive and robust pathogen detection is thus important for a more targeted application. Bacteriophages contain a large repertoire of pathogen-binding proteins. These tailspike proteins (TSP) often bind surface glycans and represent a promising design platform for specific pathogen sensors. We analysed bacteriophage Sf6 TSP that recognizes the O-polysaccharide of dysentery-causing Shigella flexneri to develop variants with increased sensitivity for sensor applications. Ligand polyrhamnose backbone conformations were obtained from 2D

Indexed as

BacteriophagesBinding SitesGlycoside HydrolasesLigandsMolecular Dynamics SimulationO AntigensShigella flexneriViral Tail ProteinsGlycoside HydrolasesLigandsO Antigenstailspike protein, bacteriophageViral Tail Proteinscarbohydratesmolecular dynamics simulationsNMR spectroscopyprotein-carbohydrate interactionssurface plasmon resonance

Identifiers

PMID32189378
PMCPMC7463171

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.