Evidence map›Paper›PMID 32187560›Full record

ArticleCell reports2020

Defining Epidermal Basal Cell States during Skin Homeostasis and Wound Healing Using Single-Cell Transcriptomics.

Daniel Haensel, Suoqin Jin, Peng Sun, Rachel Cinco, Morgan Dragan, Quy Nguyen, Zixuan Cang, Yanwen Gong, Remy Vu, Adam L MacLean and 4 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 154 papers.

0numbers the graph read from it
0cells of the map it votes in
154citing papers in PubMed
10.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

154 citing papers in PubMed, 240 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Hydrogel-based neural engineering for skin wound healing.Frontiers in cell and developmental biology · 2026
    Review
  19. Mapping the Tissue-of-Origins of Mesenchymal Stromal Cells in Injury Repair.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  20. Loss of MFAP5 and Its Effect on Skin Homeostasis and Wound Healing.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article

94 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 1 institution in 1 country.

Daniel HaenselDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, CA 92697, USA; The NSF-Simons Center for Multiscale Cell Fate Research, University of California, Irvine, CA 92627, USA.
Suoqin JinDepartment of Mathematics, University of California, Irvine, CA 92697, USA.
Peng SunDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, CA 92697, USA.
Rachel CincoLaboratory for Fluorescence Dynamics, Department of Biomedical Engineering, University of California, Irvine, CA 92697, USA.
Morgan DraganDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, CA 92697, USA; The NSF-Simons Center for Multiscale Cell Fate Research, University of California, Irvine, CA 92627, USA.
Quy NguyenDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, CA 92697, USA.
Zixuan CangThe NSF-Simons Center for Multiscale Cell Fate Research, University of California, Irvine, CA 92627, USA; Department of Mathematics, University of California, Irvine, CA 92697, USA.
Yanwen GongDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, CA 92697, USA; Center for Complex Biological Systems, University of California, Irvine, CA 92697, USA.
Remy VuDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, CA 92697, USA; The NSF-Simons Center for Multiscale Cell Fate Research, University of California, Irvine, CA 92627, USA.
Adam L MacLeanDepartment of Mathematics, University of California, Irvine, CA 92697, USA.
Kai KessenbrockDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, CA 92697, USA.
Enrico GrattonLaboratory for Fluorescence Dynamics, Department of Biomedical Engineering, University of California, Irvine, CA 92697, USA.
Qing NieThe NSF-Simons Center for Multiscale Cell Fate Research, University of California, Irvine, CA 92627, USA; Department of Mathematics, University of California, Irvine, CA 92697, USA; Department of Developmental and Cell Biology, University of California, Irvine, CA 92697, USA. Electronic address: qnie@uci.edu.
Xing DaiDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, CA 92697, USA; The NSF-Simons Center for Multiscale Cell Fate Research, University of California, Irvine, CA 92627, USA. Electronic address: xdai@uci.edu.
University of California, Irvine · US

Funding

TRD4: Phasor analysisP41GM103540 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI GRATTON, ENRICO · 2012 to 2020
$12.5M
UCI P30 Skin Center Systems Biology CoreP30AR075047 · NIAMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI ANDERSEN, BOGI, GANESAN, ANAND K · 2019 to 2025
$5.1M
Multiscale Models of Wound Cell Plasticity for RegenerationU01AR073159 · NIAMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI DAI, XING, NIE, QING · 2018 to 2022
$3.5M
Mammary basal/stem cell plasticity and regulationR01GM123731 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI DAI, XING · 2017 to 2020
$1.9M
Control of epithelial plasticity and differentiation in hair follicle stem/progenitor cellsR01AR068074 · NIAMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI DAI, XING · 2015 to 2019
$1.7M
NIAMS NIH HHS P30 AR075047NIAMS NIH HHS R01 AR068074NIAMS NIH HHS U01 AR073159NIGMS NIH HHS P41 GM103540NIGMS NIH HHS R01 GM123731
6 · The paper itself

Abstract

Our knowledge of transcriptional heterogeneities in epithelial stem and progenitor cell compartments is limited. Epidermal basal cells sustain cutaneous tissue maintenance and drive wound healing. Previous studies have probed basal cell heterogeneity in stem and progenitor potential, but a comprehensive dissection of basal cell dynamics during differentiation is lacking. Using single-cell RNA sequencing coupled with RNAScope and fluorescence lifetime imaging, we identify three non-proliferative and one proliferative basal cell state in homeostatic skin that differ in metabolic preference and become spatially partitioned during wound re-epithelialization. Pseudotemporal trajectory and RNA velocity analyses predict a quasi-linear differentiation hierarchy where basal cells progress from Col17a1

Indexed as

Gene Expression ProfilingSingle-Cell AnalysisAnimalsCell MovementEpidermisFemaleHomeostasisInflammationMice, Inbred C57BLMice, TransgenicUp-RegulationWound Healingbasal cell statecellular transition dynamicsepidermisFLIMmetabolismplasticitysingle-cell RNA sequencingskinstem cellwound healing

Identifiers

PMID32187560
PMCPMC7218802
OpenAlexW3011263601

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.