Evidence map›Paper›PMID 32186367›Full record

ArticleACS chemical biology2020

Development of Ratiometric Bioluminescent Sensors for

Andrew B Dippel, Wyatt A Anderson, Jin Hwan Park, Fitnat H Yildiz, Ming C Hammond

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Andrew B DippelDepartment of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States.
Wyatt A AndersonDepartment of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States.
Jin Hwan ParkDepartment of Microbiology and Environmental Toxicology, University of California, Santa Cruz, Santa Cruz, California 95064, United States.ORCID 0000-0001-8384-7909
Fitnat H YildizDepartment of Microbiology and Environmental Toxicology, University of California, Santa Cruz, Santa Cruz, California 95064, United States.
Ming C HammondDepartment of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States.ORCID 0000-0003-2666-4764
University of Utah · USUniversity of California, Santa Cruz · US

Funding

Univ of Calif Berkeley Chemistry-Biology Interface ProgramT32GM066698 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI CHANG, CHRISTOPHER J., FRANCIS, MATTHEW B · 2004 to 2023
$7.5M
Vibrio cholerae c-diGMP signaling: Motile to biofilm transition and transmissionR01AI102584 · NIAID · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI YILDIZ, HAVVA FITNAT · 2013 to 2023
$6.5M
Enabling High-Throughput Analysis and Single-Cell Imaging of Bacterial SignalsR01GM124589 · NIGMS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI HAMMOND, MING CHEN · 2017 to 2025
$2.8M
NIAID NIH HHS R01 AI102584NIGMS NIH HHS R01 GM124589NIGMS NIH HHS T32 GM066698
6 · The paper itself

Abstract

Second messenger signaling networks allow cells to sense and adapt to changing environmental conditions. In bacteria, the nearly ubiquitous second messenger molecule cyclic di-GMP coordinates diverse processes such as motility, biofilm formation, and virulence. In bacterial pathogens, these signaling networks allow the bacteria to survive changing environmental conditions that are experienced during infection of a mammalian host. While studies have examined the effects of cyclic di-GMP levels on virulence in these pathogens, it has not been possible to visualize cyclic di-GMP levels in real time during the stages of host infection. Toward this goal, we generate the first ratiometric, chemiluminescent biosensor scaffold that selectively responds to c-di-GMP. By engineering the biosensor scaffold, a suite of Venus-YcgR-NLuc (VYN) biosensors is generated that provide extremely high sensitivity (

Indexed as

Bacterial ProteinsBiosensing TechniquesCyclic GMPEnergy TransferEscherichia coliEscherichia coli ProteinsLimit of DetectionLuciferasesLuminescent AgentsLuminescent MeasurementsLuminescent ProteinsProof of Concept StudyProtein BindingProtein EngineeringSignal TransductionVibrio choleraeBacterial Proteinsbis(3',5')-cyclic diguanylic acidCyclic GMPEscherichia coli ProteinsLuciferasesLuminescent AgentsLuminescent ProteinsYcgR protein, E coliyellow fluorescent protein, Bacteria

Identifiers

PMID32186367
PMCPMC7233196
OpenAlexW3010995870

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.