Evidence map›Paper›PMID 32185567›Full record

ArticleFish physiology and biochemistry2020

Pigmentation formation and expression analysis of tyrosinase in Siniperca chuatsi.

Minglin Wu, Xiaowu Chen, Kai Cui, Haiyang Li, Yangyang Jiang

Abstract read
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In one paragraph

Article in Fish physiology and biochemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Minglin WuFisheries Research Institute, Anhui Academy of Agricultural Sciences, NO.40 South Nongke Road, Luyang District, Hefei, 230031, Anhui, China.
Xiaowu ChenNational Demonstration Center for Experimental Fisheries Science Education (Shanghai Ocean University), Shanghai, 201306, China.
Kai CuiFisheries Research Institute, Anhui Academy of Agricultural Sciences, NO.40 South Nongke Road, Luyang District, Hefei, 230031, Anhui, China. kaicui66@126.com.
Haiyang LiFisheries Research Institute, Anhui Academy of Agricultural Sciences, NO.40 South Nongke Road, Luyang District, Hefei, 230031, Anhui, China.
Yangyang JiangFisheries Research Institute, Anhui Academy of Agricultural Sciences, NO.40 South Nongke Road, Luyang District, Hefei, 230031, Anhui, China.
Anhui Academy of Agricultural Sciences · CNShanghai Ocean University · CN

Funding

Anhui Provincial Natural Science Foundation 1808085QC81China Agriculture Research System CARS-46, 45
6 · The paper itself

Abstract

Animal pigmentation primarily depends on the presence and mixing ratio of chromatophores, functioning in animal survival and communication. For the benthic and carnivorous Siniperca chuatsi, pigmentation pattern is key to concealment and predation. In this study, the formation, distribution, and main pattern of chromatophores were observed in the embryos, larvae, skins, and visceral tissues from S. chuatsi. Melanophores were firstly visualized in the yolk sac at segmentation stage, and then they were migrated to the whole body and further clustered into the black stripes, bands, and patches. In adult S. chuatsi, the head, black band, and body side skins mainly contained melanophores, showing as deep or light black. The abdomen skin mainly contained iridophores, showing as silvery. In the eye, the pigment layers were located in the epithelial layers of iris and retina and shown as black. Then, the pigmentation-related gene, tyrosinase gene from S. chuatsi (Sc-tyr) was analyzed by bioinformatics and quantitative methods. The Sc-tyr gene encoded a protein with 540 amino acids (Sc-TYR). The Sc-TYR contained two copper ion binding sites, which were coordinated by six conserved histidines (H182, H205, H214, H366, H370, H393) and necessary for catalytic activity. The Sc-TYR was well conserved compared with TYR of various species with higher degree of sequence similarity with other fishes (77.6-98.3%). The qRT-PCR test showed that the Sc-tyr mRNA reached the peak value at segmentation stage in the embryo development, the black skins displayed a higher expression level than that in silvery skin, and the eye had the highest expression level compared with other tissues. Further research on enzyme activity showed that the expression patterns of tyrosinase activity were similar to that of the Sc-tyr mRNA. Comparing with the results of molecular and phenotype, it was found that the temporal and spatial distributions of tyrosinase corresponded well with changes in pigmentation patterns and the intensity of skin melanization. This study initially explored the pigmentation formation and tyrosinase expression, which served as a foundation for further insight into the genetics mechanism of body color formation in S. chuatsi.

Indexed as

Amino Acid SequenceAnimalsBase SequenceChromatophoresComputational BiologyFishesFrozen SectionsKidneyLarvaMelanophoresMolecular ConformationMonophenol MonooxygenasePhylogenyPigmentationPigment Epithelium of EyePredatory BehaviorMonophenol MonooxygenaseMelanophoresPigmentationSiniperca chuatsiTyrosinase

Identifiers

PMID32185567
OpenAlexW3011857016

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.