Evidence map›Paper›PMID 32185378›Full record

ArticleJournal of the Pediatric Infectious Diseases Society2021

Whole Genome Sequencing Detects Minimal Clustering Among Escherichia coli Sequence Type 131-H30 Isolates Collected From United States Children's Hospitals.

Arianna Miles-Jay, Scott J Weissman, Amanda L Adler, Janet G Baseman, Danielle M Zerr

Open access · greenAbstract read
In one paragraph

Article in Journal of the Pediatric Infectious Diseases Society, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 56% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Whole-Genome Sequencing Surveillance and Machine Learning of the Electronic Health Record for Enhanced Healthcare Outbreak Detection.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2022
    Article
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Arianna Miles-JayDepartment of Epidemiology, University of Washington, Seattle, Washington, USA.
Scott J WeissmanSeattle Children's Research Institute, Seattle, Washington, USA.
Amanda L AdlerSeattle Children's Research Institute, Seattle, Washington, USA.
Janet G BasemanDepartment of Epidemiology, University of Washington, Seattle, Washington, USA.
Danielle M ZerrSeattle Children's Research Institute, Seattle, Washington, USA.
University of Washington · US

Funding

NRSA Training CoreTL1TR002318 · NCATS · UNIVERSITY OF WASHINGTON · PI Megan Moore · 2017 to 2026
$8.4M
National surveillance of emerging MDR in pediatric Enterobacteriaceae infectionsR01AI083413 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI WEISSMAN, SCOTT J, ZERR, DANIELLE M · 2010 to 2013
$2.3M
Institute of Translational Health SciencesTL1TR000422 · NCATS · UNIVERSITY OF WASHINGTON · PI DISIS, MARY L. · 2012 to 2016
$2.1M
NCATS NIH HHS TL1 TR000422NCATS NIH HHS TL1 TR002318NIAID NIH HHS R01 AI083413
6 · The paper itself

Abstract

We applied whole genome sequencing to identify putative transmission clusters among clinical multidrug-resistant Escherichia coli sequence type 131-H30 isolates from 4 United States children's hospitals. Of 126 isolates, 17 were involved in 8 putative transmission clusters; 4 clusters showed evidence of healthcare-associated epidemiologic linkages. Geographic clustering analyses showed weak geographic clustering.

Indexed as

Escherichia coliEscherichia coli InfectionsAnti-Bacterial Agentsbeta-LactamasesChildCluster AnalysisDrug Resistance, Multiple, BacterialHospitalsHumansUnited StatesWhole Genome SequencingAnti-Bacterial Agentsbeta-Lactamasesantimicrobial resistanceE coli infectionsST131

Identifiers

PMID32185378
PMCPMC7996643
OpenAlexW3012110864

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.