Evidence map›Paper›PMID 32183640›Full record

ArticleJournal of the Royal Society, Interface2020

Symbolic transfer entropy reveals the age structure of pandemic influenza transmission from high-volume influenza-like illness data.

Stephen M Kissler, Cécile Viboud, Bryan T Grenfell, Julia R Gog

Abstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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  7. The duration of travel impacts the spatial dynamics of infectious diseases.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Stephen M KisslerDepartment of Applied Mathematics and Theoretical Physics, University of Cambridge, Wilberforce Road, Cambridge, UK.
Cécile ViboudFogarty International Center, National Institutes of Health, Bethesda, MA, USA.
Bryan T GrenfellDepartment of Ecology and Evolutionary Biology, University of Princeton, Princeton, NJ, USA.
Julia R GogDepartment of Applied Mathematics and Theoretical Physics, University of Cambridge, Wilberforce Road, Cambridge, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Existing methods to infer the relative roles of age groups in epidemic transmission can normally only accommodate a few age classes, and/or require data that are highly specific for the disease being studied. Here, symbolic transfer entropy (STE), a measure developed to identify asymmetric transfer of information between stochastic processes, is presented as a way to reveal asymmetric transmission patterns between age groups in an epidemic. STE provides a ranking of which age groups may dominate transmission, rather than a reconstruction of the explicit between-age-group transmission matrix. Using simulations, we establish that STE can identify which age groups dominate transmission even when there are differences in reporting rates between age groups and even if the data are noisy. Then, the pairwise STE is calculated between time series of influenza-like illness for 12 age groups in 884 US cities during the autumn of 2009. Elevated STE from 5 to 19 year-olds indicates that school-aged children were likely the most important transmitters of infection during the autumn wave of the 2009 pandemic in the USA. The results may be partially confounded by higher rates of physician-seeking behaviour in children compared to adults, but it is unlikely that differences in reporting rates can explain the observed differences in STE.

Indexed as

Influenza A Virus, H1N1 SubtypeInfluenza, HumanAdultChildCitiesEntropyHumansPandemicsage structureelectronic medical recordsinfluenza-like illnesspandemic influenzasymbolic transfer entropy

Identifiers

PMID32183640
PMCPMC7115222

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.