Evidence map›Paper›PMID 32181977›Full record

ArticleThe FEBS journal2020

Site-specific functionality and tryptophan mimicry of lipidation in tetraspanin CD9.

Viviana Neviani, Sjoerd van Deventer, Tobias P Wörner, Katerina T Xenaki, Michiel van de Waterbeemd, Remco N P Rodenburg, Inge M N Wortel, Jeroen K Kuiper, Sofie Huisman, Joke Granneman and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The FEBS journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
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  3. Review
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  9. Review
  10. Multifaceted Activities of Seven Nanobodies against Complement C4b.Journal of immunology (Baltimore, Md. : 1950) · 2022
    Article
  11. Review
  12. CD9, a tetraspanin target for cancer therapy?Experimental biology and medicine (Maywood, N.J.) · 2021
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 2 countries.

Viviana NevianiCrystal and Structural Chemistry, Department of Chemistry, Bijvoet Center for Biomolecular Research, Utrecht University, The Netherlands.ORCID 0000-0002-5729-3639
Sjoerd van DeventerDepartment of Tumor Immunology, Radboud Institute for Molecular Life Sciences, Radboud UMC, Nijmegen, The Netherlands.ORCID 0000-0001-8972-6665
Tobias P WörnerBiomolecular Mass Spectrometry and Proteomics, Department of Chemistry, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, The Netherlands.
Katerina T XenakiCell Biology, Department of Biology, Utrecht University, The Netherlands.ORCID 0000-0002-0153-6320
Michiel van de WaterbeemdBiomolecular Mass Spectrometry and Proteomics, Department of Chemistry, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, The Netherlands.
Remco N P RodenburgCrystal and Structural Chemistry, Department of Chemistry, Bijvoet Center for Biomolecular Research, Utrecht University, The Netherlands.
Inge M N WortelDepartment of Tumor Immunology, Radboud Institute for Molecular Life Sciences, Radboud UMC, Nijmegen, The Netherlands.ORCID 0000-0003-3362-5229
Jeroen K KuiperDepartment of Tumor Immunology, Radboud Institute for Molecular Life Sciences, Radboud UMC, Nijmegen, The Netherlands.
Sofie HuismanCrystal and Structural Chemistry, Department of Chemistry, Bijvoet Center for Biomolecular Research, Utrecht University, The Netherlands.
Joke GrannemanCrystal and Structural Chemistry, Department of Chemistry, Bijvoet Center for Biomolecular Research, Utrecht University, The Netherlands.
Paul M P van Bergen En HenegouwenCell Biology, Department of Biology, Utrecht University, The Netherlands.ORCID 0000-0001-6050-9042
Albert J R HeckBiomolecular Mass Spectrometry and Proteomics, Department of Chemistry, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, The Netherlands.ORCID 0000-0002-2405-4404
Annemiek B van SprielDepartment of Tumor Immunology, Radboud Institute for Molecular Life Sciences, Radboud UMC, Nijmegen, The Netherlands.ORCID 0000-0002-3590-2368
Piet GrosCrystal and Structural Chemistry, Department of Chemistry, Bijvoet Center for Biomolecular Research, Utrecht University, The Netherlands.ORCID 0000-0002-7782-2585
Utrecht University · NLRadboud University Nijmegen · NL

Funding

EXPERIMENTAL RADIOTHERAPY--BASIS AND MODIFICATIONR01CA015201 · NCI · STANFORD UNIVERSITY · PI BROWN, JOHN MARTIN · 1985 to 2002
$749k
EXPERIMENTAL RADIOTHERAPY;BASIS AND MODIFICATIONR37CA015201 · NCI · STANFORD UNIVERSITY · PI BROWN, JOHN MARTIN · 1989 to 1996
–
6 · The paper itself

Abstract

Lipidation of transmembrane proteins regulates many cellular activities, including signal transduction, cell-cell communication, and membrane trafficking. However, how lipidation at different sites in a membrane protein affects structure and function remains elusive. Here, using native mass spectrometry we determined that wild-type human tetraspanins CD9 and CD81 exhibit nonstochastic distributions of bound acyl chains. We revealed CD9 lipidation at its three most frequent lipidated sites suffices for EWI-F binding, while cysteine-to-alanine CD9 mutations markedly reduced binding of EWI-F. EWI-F binding by CD9 was rescued by mutating all or, albeit to a lesser extent, only the three most frequently lipidated sites into tryptophans. These mutations did not affect the nanoscale distribution of CD9 in cell membranes, as shown by super-resolution microscopy using a CD9-specific nanobody. Thus, these data demonstrate site-specific, possibly conformation-dependent, functionality of lipidation in tetraspanin CD9 and identify tryptophan mimicry as a possible biochemical approach to study site-specific transmembrane-protein lipidation.

Indexed as

AlanineCell CommunicationCell MembraneHumansLipidsMutationProtein BindingTetraspanin 29TryptophanAlanineCD9 protein, humanLipidsTetraspanin 29TryptophanCD9lipidationpalmitoylationtetraspanintryptophan mimicry

Identifiers

PMID32181977
PMCPMC7818406
OpenAlexW3010935409

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.