Evidence map›Paper›PMID 32180790›Full record

ReviewFrontiers in genetics2019

Genome-Wide Association Studies and Genomic Selection in Pearl Millet: Advances and Prospects.

Rakesh K Srivastava, Ram B Singh, Vijaya Lakshmi Pujarula, Srikanth Bollam, Madhu Pusuluri, Tara Satyavathi Chellapilla, Rattan S Yadav, Rajeev Gupta

Open access · goldAbstract readReview
In one paragraph

Review in Frontiers in genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
13.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 107 citations in OpenAlex.

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  13. The potentialities of omics resources for millet improvement.Functional & integrative genomics · 2023
    Review
  14. Review
  15. Article
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  18. Usefulness of temperate-adapted maize lines developed by doubled haploid and single-seed descent methods.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  19. Article
  20. Improvement of millets in the post-genomic era.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Rakesh K SrivastavaInternational Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Ram B SinghInternational Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Vijaya Lakshmi PujarulaInternational Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Srikanth BollamInternational Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Madhu PusuluriInternational Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
Tara Satyavathi ChellapillaAll India Coordinated Research Project on Pearl Millet (AICRP-PM), Indian Council of Agricultural Research (ICAR), Jodhpur, India.
Rattan S YadavInstitute of Biological, Environmental & Rural Sciences (IBERS), Aberystwyth University, Gogerddan, United Kingdom.
Rajeev GuptaInternational Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Hyderabad, India.
International Crops Research Institute for the Semi-Arid Tropics · INAberystwyth University · GBIndian Council of Agricultural Research · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pearl millet is a climate-resilient, drought-tolerant crop capable of growing in marginal environments of arid and semi-arid regions globally. Pearl millet is a staple food for more than 90 million people living in poverty and can address the triple burden of malnutrition substantially. It remained a neglected crop until the turn of the 21st century, and much emphasis has been placed since then on the development of various genetic and genomic resources for whole-genome scan studies, such as the genome-wide association studies (GWAS) and genomic selection (GS). This was facilitated by the advent of sequencing-based genotyping, such as genotyping-by-sequencing (GBS), RAD-sequencing, and whole-genome re-sequencing (WGRS) in pearl millet. To carry out GWAS and GS, a world association mapping panel called the Pearl Millet inbred Germplasm Association Panel (PMiGAP) was developed at ICRISAT in partnership with Aberystwyth University. This panel consisted of germplasm lines, landraces, and breeding lines from 27 countries and was re-sequenced using the WGRS approach. It has a repository of circa 29 million genome-wide SNPs. PMiGAP has been used to map traits related to drought tolerance, grain Fe and Zn content, nitrogen use efficiency, components of endosperm starch, grain yield, etc. Genomic selection in pearl millet was jump-started recently by WGRS, RAD, and tGBS (tunable genotyping-by-sequencing) approaches for the PMiGAP and hybrid parental lines. Using multi-environment phenotyping of various training populations, initial attempts have been made to develop genomic selection models. This mini review discusses advances and prospects in GWAS and GS for pearl millet.

Indexed as

genetic resourcesgenome-wide association studiesgenomic resourcesgenomic selectionmolecular markerspearl millet

Identifiers

PMID32180790
PMCPMC7059752
OpenAlexW3007388019

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.