Evidence map›Paper›PMID 32180666›Full record

ArticleInformation processing in medical imaging : proceedings of the ... conference2019

Spherical U-Net on Cortical Surfaces: Methods and Applications.

Fenqiang Zhao, Shunren Xia, Zhengwang Wu, Dingna Duan, Li Wang, Weili Lin, John H Gilmore, Dinggang Shen, Gang Li

Open access · greenAbstract read
In one paragraph

Article in Information processing in medical imaging : proceedings of the ... conference, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
9.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Article
  3. DEEP-GYRALNET: ENABLING MACHINE LEARNING IN GYRAL FOLDING PATTERN EXTRACTION ON CORTICAL SURFACE.Proceedings. IEEE International Symposium on Biomedical Imaging · 2026
    Article
  4. Article
  5. Unified Brain Surface and Volume Registration.... International Conference on Learning Representations · 2026
    Article
  6. Article
  7. Linear Spherical Sliced Optimal Transport: A Fast Metric for Comparing Spherical Data.... International Conference on Learning Representations · 2025
    Article
  8. Article
  9. Attention Rings for Shape Analysis and Application to MRI Quality Control.Proceedings of SPIE--the International Society for Optical Engineering · 2025
    Article
  10. Longitudinally Consistent Individualized Prediction of Infant Cortical Morphological Development.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2024
    Article
  11. Consecutive-Contrastive Spherical U-Net: Enhancing Reliability of Individualized Functional Brain Parcellation for Short-Duration fMRI Scans.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2024
    Article
  12. Disentangled Hybrid Transformer for Identification of Infants with Prenatal Drug Exposure.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2024
    Article
  13. Article
  14. Article
  15. ShapeAXI: Shape Analysis Explainability and Interpretability.Proceedings of SPIE--the International Society for Optical Engineering · 2024
    Article
  16. IcoConv : Explainable brain cortical surface analysis for ASD classification.Shape in medical imaging : International Workshop, ShapeMI 2023, held in conjunction with MICCAI 2023, Vancouver, BC, Canada, October 8, 2023, Proceedings. ShapeMI (Workshop) (2023 : Vancouver, B.C.) · 2023
    Article
  17. Multi-task Joint Prediction of Infant Cortical Morphological and Cognitive Development.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2023
    Article
  18. Article
  19. Fast Spherical Mapping of Cortical Surface Meshes Using Deep Unsupervised Learning.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2022
    Article
  20. Spherical Transformer on Cortical Surfaces.Machine learning in medical imaging. MLMI (Workshop) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Fenqiang ZhaoKey Laboratory of Biomedical Engineering of Ministry of Education, Zhejiang University, Hangzhou, China.
Shunren XiaKey Laboratory of Biomedical Engineering of Ministry of Education, Zhejiang University, Hangzhou, China.
Zhengwang WuDepartment of Radiology and BRIC, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Dingna DuanKey Laboratory of Biomedical Engineering of Ministry of Education, Zhejiang University, Hangzhou, China.
Li WangDepartment of Radiology and BRIC, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Weili LinDepartment of Radiology and BRIC, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
John H GilmoreDepartment of Psychiatry, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Dinggang ShenDepartment of Radiology and BRIC, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Gang LiDepartment of Radiology and BRIC, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
University of North Carolina at Chapel Hill · USZhejiang University · CN

Funding

Continued Development of Infant Brain Analysis ToolsR01MH117943 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LI, GANG, WANG, LI · 2018 to 2022
$2.3M
Parcellating Infant Cerebral Cortex based on Developmental Patterns of Multimodal MRIR01MH116225 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LI, GANG · 2018 to 2022
$1.9M
Volume-based Analysis of 6-month Infant Brain MRI for Autism Biomarker Identification and Early DiagnosisK01MH109773 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI WANG, LI · 2017 to 2020
$571k
4D Cortical Surface Analysis Tools for Study of Early Brain Development in Typical and High-risk InfantsK01MH107815 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LI, GANG · 2015 to 2018
$559k
Constructing 4-dimensional Infant Cortical Surface AtlasesR21MH108914 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LI, GANG · 2016 to 2017
$418k
NIMH NIH HHS K01 MH107815NIMH NIH HHS K01 MH109773NIMH NIH HHS R01 MH116225NIMH NIH HHS R01 MH117943NIMH NIH HHS R21 MH108914
6 · The paper itself

Abstract

Convolutional Neural Networks (CNNs) have been providing the state-of-the-art performance for learning-related problems involving 2D/3D images in Euclidean space. However, unlike in the Euclidean space, the shapes of many structures in medical imaging have a spherical topology in a manifold space, e.g., brain cortical or subcortical surfaces represented by triangular meshes, with large inter-subject and intra-subject variations in vertex number and local connectivity. Hence, there is no consistent neighborhood definition and thus no straightforward convolution/transposed convolution operations for cortical/subcortical surface data. In this paper, by leveraging the regular and consistent geometric structure of the resampled cortical surface mapped onto the spherical space, we propose a novel convolution filter analogous to the standard convolution on the image grid. Accordingly, we develop corresponding operations for convolution, pooling, and transposed convolution for spherical surface data and thus construct spherical CNNs. Specifically, we propose the Spherical U-Net architecture by replacing all operations in the standard U-Net with their spherical operation counterparts. We then apply the Spherical U-Net to two challenging and neuroscientifically important tasks in infant brains: cortical surface parcellation and cortical attribute map development prediction. Both applications demonstrate the competitive performance in the accuracy, computational efficiency, and effectiveness of our proposed Spherical U-Net, in comparison with the state-of-the-art methods.

Indexed as

Convolutional Neural NetworkCortical SurfaceParcellationPredictionSpherical U-Net

Identifiers

PMID32180666
PMCPMC7074928
OpenAlexW2930767015

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.