Evidence map›Paper›PMID 32179769›Full record

ArticleScientific reports2020

Development of an experimental method of systematically estimating protein expression limits in HEK293 cells.

Yoshihiro Mori, Yuki Yoshida, Ayano Satoh, Hisao Moriya

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 35 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Yoshihiro MoriGraduate School of Natural Science and Technology, Okayama University, Okayama, Japan.
Yuki YoshidaSony Computer Science Laboratories, Tokyo, Japan.
Ayano SatohGraduate School of Interdisciplinary Science and Engineering in Health Systems, Okayama University, Okayama, Japan.
Hisao MoriyaResearch Core for Interdisciplinary Sciences, Okayama University, Okayama, Japan. hisaom@cc.okayama-u.ac.jp.
Okayama University · JPSony Computer Science Laboratories · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein overexpression sometimes causes cellular defects, although the underlying mechanism is still unknown. A protein's expression limit, which triggers cellular defects, is a useful indication of the underlying mechanism. In this study, we developed an experimental method of estimating the expression limits of target proteins in the human embryonic kidney cell line HEK293 by measuring the proteins' expression levels in cells that survived after the high-copy introduction of plasmid DNA by which the proteins were expressed under a strong cytomegalovirus promoter. The expression limits of nonfluorescent target proteins were indirectly estimated by measuring the levels of green fluorescent protein (GFP) connected to the target proteins with the self-cleaving sequence P2A. The expression limit of a model GFP was ~5.0% of the total protein, and sustained GFP overexpression caused cell death. The expression limits of GFPs with mitochondria-targeting signals and endoplasmic reticulum localization signals were 1.6% and 0.38%, respectively. The expression limits of four proteins involved in vesicular trafficking were far lower compared to a red fluorescent protein. The protein expression limit estimation method developed will be valuable for defining toxic proteins and consequences of protein overexpression.

Indexed as

Gene ExpressionCell DeathCytomegalovirusDNAEndoplasmic ReticulumGreen Fluorescent ProteinsHEK293 CellsHumansLuminescent ProteinsMethotrexatePlasmidsPromoter Regions, GeneticProtein BiosynthesisProtein TransportRed Fluorescent ProteinTetrahydrofolate DehydrogenaseDNAGreen Fluorescent ProteinsLuminescent ProteinsMethotrexateRed Fluorescent ProteinTetrahydrofolate Dehydrogenase

Identifiers

PMID32179769
PMCPMC7075890
OpenAlexW3012017220

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.