Evidence map›Paper›PMID 32179652›Full record

ArticleThe Journal of biological chemistry2020

NF-κB mediates lipopolysaccharide-induced alternative pre-mRNA splicing of

Frank Fang-Yao Lee, Kevin Davidson, Chelsea Harris, Jazalle McClendon, William J Janssen, Scott Alper

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

  1. Alternative splicing of toll-like receptor pathway mRNAs in lung immune cells from patients with ARDS.American journal of physiology. Lung cellular and molecular physiology · 2026
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  13. Regulation effect of lipopolysaccharide on the alternative splicing and function of sweet taste receptor T1R2.Hua xi kou qiang yi xue za zhi = Huaxi kouqiang yixue zazhi = West China journal of stomatology · 2021
    Article
  14. Article
  15. Absence of Non-Canonical, InhibitoryFrontiers in immunology · 2021
    Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Frank Fang-Yao LeeDepartment of Biomedical Research, National Jewish Health, Denver, Colorado 80206; Center for Genes, Environment and Health, National Jewish Health, Denver, Colorado 80206; Department of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, Colorado 80045.
Kevin DavidsonPulmonary and Critical Care, WakeMed Hospital, Raleigh, North Carolina 27610.
Chelsea HarrisDepartment of Biomedical Research, National Jewish Health, Denver, Colorado 80206; Center for Genes, Environment and Health, National Jewish Health, Denver, Colorado 80206; Department of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, Colorado 80045.
Jazalle McClendonDepartment of Medicine, National Jewish Health, Denver, Colorado 80206.
William J JanssenDepartment of Medicine, National Jewish Health, Denver, Colorado 80206; Division of Pulmonary Sciences and Critical Care Medicine, Department of Medicine, University of Colorado School of Medicine, Aurora, Colorado 80045.
Scott AlperDepartment of Biomedical Research, National Jewish Health, Denver, Colorado 80206; Center for Genes, Environment and Health, National Jewish Health, Denver, Colorado 80206; Department of Immunology and Microbiology, University of Colorado School of Medicine, Aurora, Colorado 80045. Electronic address: alpers@njhealth.org.
National Jewish Health · USWakeMed · US

Funding

MULTIDISCIPLINARY RESPIRATORY DISEASES RESEARCH TRAININGT32HL007085 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI ELLEN L BURNHAM, LISA A MAIER · 1985 to 2026
$21.6M
Lung Macrophage Programming in Acute Lung InjuryR35HL140039 · NHLBI · NATIONAL JEWISH HEALTH · PI JANSSEN, WILLIAM · 2018 to 2024
$6.4M
Mechanisms of lung macrophage programming by MUC5B during health and diseaseR01HL130938 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI EVANS, CHRISTOPHER M · 2016 to 2025
$5.2M
Temporal regulation of pulmonary inflammation by MyD88 alternative pre-mRNA splicingR01HL148335 · NHLBI · NATIONAL JEWISH HEALTH · PI ALPER, SCOTT · 2019 to 2022
$2.3M
Toxin-induced alternative mRNA splicing in Toll-like receptor signaling pathwaysR01ES025161 · NIEHS · NATIONAL JEWISH HEALTH · PI ALPER, SCOTT · 2016 to 2020
$1.8M
Regulation of innate immunity by a novel protein interaction networkR21AI132827 · NIAID · NATIONAL JEWISH HEALTH · PI ALPER, SCOTT · 2019 to 2020
$450k
NHLBI NIH HHS R01 HL130938NHLBI NIH HHS R01 HL148335NHLBI NIH HHS R35 HL140039NHLBI NIH HHS T32 HL007085NIAID NIH HHS R21 AI132827NIEHS NIH HHS R01 ES025161
6 · The paper itself

Abstract

Although a robust inflammatory response is needed to combat infection, this response must ultimately be terminated to prevent chronic inflammation. One mechanism that terminates inflammatory signaling is the production of alternative mRNA splice forms in the Toll-like receptor (TLR) signaling pathway. Whereas most genes in the TLR pathway encode positive mediators of inflammatory signaling, several, including that encoding the MyD88 signaling adaptor, also produce alternative spliced mRNA isoforms that encode dominant-negative inhibitors of the response. Production of these negatively acting alternatively spliced isoforms is induced by stimulation with the TLR4 agonist lipopolysaccharide (LPS); thus, this alternative pre-mRNA splicing represents a negative feedback loop that terminates TLR signaling and prevents chronic inflammation. In the current study, we investigated the mechanisms regulating the LPS-induced alternative pre-mRNA splicing of the

Indexed as

Alternative SplicingAnimalsGene Expression RegulationLipopolysaccharidesMacrophagesMiceMyeloid Differentiation Factor 88NF-kappa BRAW 264.7 CellsRNA PrecursorsRNA SplicingSignal TransductionToll-Like Receptor 4Transcription, GeneticLipopolysaccharidesMyeloid Differentiation Factor 88NF-kappa BRNA PrecursorsToll-Like Receptor 4alternative pre-mRNA splicinggene regulationinflammationlipopolysaccharidemacrophagemyeloid differentiation primary response gene 88 (MyD88)NF-kappaB (NF-KB)Toll-like receptor 4 (TLR4)TRIF

Identifiers

PMID32179652
PMCPMC7196638
OpenAlexW3012266897

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.