Evidence map›Paper›PMID 32179589›Full record

ArticleGenome research2020

Identification of FMR1-regulated molecular networks in human neurodevelopment.

Meng Li, Junha Shin, Ryan D Risgaard, Molly J Parries, Jianyi Wang, Deborah Chasman, Shuang Liu, Sushmita Roy, Anita Bhattacharyya, Xinyu Zhao

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 1 synthesis or guideline pooled it, 66 citations in OpenAlex.

  1. Variable expression ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Pooled it
  2. The mMolecular psychiatry · 2026
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  9. Autism risk genes converge onbioRxiv : the preprint server for biology · 2025
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  19. Antisense oligonucleotide rescue of CGG expansion-dependentProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Meng Li *Waisman Center, University of Wisconsin-Madison, Madison, Wisconsin 53705, USA.ORCID 0000-0002-0145-5440
Junha Shin *Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, Wisconsin 53705, USA.
Ryan D RisgaardWaisman Center, University of Wisconsin-Madison, Madison, Wisconsin 53705, USA.ORCID 0000-0002-6240-9843
Molly J ParriesWaisman Center, University of Wisconsin-Madison, Madison, Wisconsin 53705, USA.
Jianyi WangWaisman Center, University of Wisconsin-Madison, Madison, Wisconsin 53705, USA.
Deborah ChasmanWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, Wisconsin 53705, USA.
Shuang LiuWaisman Center, University of Wisconsin-Madison, Madison, Wisconsin 53705, USA.
Sushmita RoyWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, Wisconsin 53705, USA.
Anita BhattacharyyaWaisman Center, University of Wisconsin-Madison, Madison, Wisconsin 53705, USA.
Xinyu ZhaoWaisman Center, University of Wisconsin-Madison, Madison, Wisconsin 53705, USA.ORCID 0000-0002-5128-4424
University of Wisconsin–Madison · US

Funding

Waisman Intellectual and Developmental Disabilities Research Center Down Syndrome RegistryU54HD090256 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI POLLAK, SETH D · 2016 to 2020
$6.0M
Translational Regulation of Adult Neural Stem CellsR01MH078972 · NIMH · UNIVERSITY OF WISCONSIN-MADISON · PI ZHAO, XINYU · 2007 to 2016
$4.3M
The Role of MDM2 in FMRP regulation of neuronal developmentR01MH116582 · NIMH · UNIVERSITY OF WISCONSIN-MADISON · PI ZHAO, XINYU · 2018 to 2022
$2.2M
Multi-level Integrative Proteomics to Alzheimer's Disease PathwaysR01AG053987 · NIA · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI PENG, JUNMIN · 2016 to 2020
$2.2M
The role of RNA binding protein in FXR1P in interneuronsR01MH118827 · NIMH · UNIVERSITY OF WISCONSIN-MADISON · PI ZHAO, XINYU · 2019 to 2023
$2.2M
Integration of Experience-Induced Gene Expression and Circuit FunctionsR01NS105200 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI JACKSON, MEYER B., ZHAO, XINYU · 2018 to 2022
$2.0M
Computational Inference of Regulatory Network Dynamics on Cell LineagesR01GM117339 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI ROY, SUSHMITA · 2016 to 2020
$1.5M
Identification of FMRP targets in human cortical neuronsR21NS105339 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI BHATTACHARYYA, ANITA, ZHAO, XINYU · 2018 to 2019
$421k
Analysis of human trisomy 21 interneuron progenitorsR21HD085288 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI BHATTACHARYYA, ANITA · 2015 to 2016
$418k
Circuit Activity and Synaptic Integration of Newborn Neurons in the Dentate GyrusR21NS098767 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI JACKSON, MEYER B., ZHAO, XINYU · 2017 to 2018
$408k
Epigenetic Crosstalk Regulates Neuronal DevelopmentR56MH113146 · NIMH · UNIVERSITY OF WISCONSIN-MADISON · PI ZHAO, XINYU · 2017 to 2017
$383k
Defining interneuron deficits in Down syndrome brain.R03HD083538 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI BHATTACHARYYA, ANITA · 2016 to 2017
$160k
NIA NIH HHS R01 AG053987NICHD NIH HHS R03 HD083538NICHD NIH HHS R21 HD085288NIGMS NIH HHS R01 GM117339NIMH NIH HHS R01 MH078972NIMH NIH HHS R01 MH116582NIMH NIH HHS R01 MH118827NIMH NIH HHS R56 MH113146NINDS NIH HHS R01 NS105200NINDS NIH HHS R21 NS098767NINDS NIH HHS R21 NS105339
6 · The paper itself

Abstract

RNA-binding proteins (RNA-BPs) play critical roles in development and disease to regulate gene expression. However, genome-wide identification of their targets in primary human cells has been challenging. Here, we applied a modified CLIP-seq strategy to identify genome-wide targets of the FMRP translational regulator 1 (FMR1), a brain-enriched RNA-BP, whose deficiency leads to Fragile X Syndrome (FXS), the most prevalent inherited intellectual disability. We identified FMR1 targets in human dorsal and ventral forebrain neural progenitors and excitatory and inhibitory neurons differentiated from human pluripotent stem cells. In parallel, we measured the transcriptomes of the same four cell types upon

Indexed as

Autistic DisorderCell LineChromatin Immunoprecipitation SequencingFragile X Messenger Ribonucleoprotein 1Fragile X SyndromeGene DeletionGene Regulatory NetworksHumansMaleNeural Stem CellsNeurogenesisNeuronsPluripotent Stem CellsProsencephalonTranscriptomeFMR1 protein, humanFragile X Messenger Ribonucleoprotein 1

Identifiers

PMID32179589
PMCPMC7111522
OpenAlexW3010977830

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.