Evidence map›Paper›PMID 32178732›Full record

ArticleVeterinary research2020

Dynamic transcriptomic changes of goat abomasal mucosa in response to Haemonchus contortus infection.

Hadeer M Aboshady, Nathalie Mandonnet, Yoann Félicité, Julien Hira, Aurore Fourcot, Claude Barbier, Anna M Johansson, Elisabeth Jonas, Jean-Christophe Bambou

Open access · goldAbstract read
In one paragraph

Article in Veterinary research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
6.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 39 citations in OpenAlex.

  1. Pooled it
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  6. Variability in the Response againstInternational journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 4 countries.

Hadeer M AboshadyAgroParisTech, Paris, France.
Nathalie MandonnetURZ Recherches Zootechniques, INRAE, 97170, Petit-Bourg, Guadeloupe, France.
Yoann FélicitéURZ Recherches Zootechniques, INRAE, 97170, Petit-Bourg, Guadeloupe, France.
Julien HiraURZ Recherches Zootechniques, INRAE, 97170, Petit-Bourg, Guadeloupe, France.
Aurore FourcotURZ Recherches Zootechniques, INRAE, 97170, Petit-Bourg, Guadeloupe, France.
Claude BarbierUEPTEA Plateforme Tropicale d'Expérimentation sur l'Animal, INRAE, 97170, Petit-Bourg, Guadeloupe, France.
Anna M JohanssonDepartment of Animal Breeding and Genetics, Swedish University of Agriculture Science, Uppsala, Sweden.
Elisabeth JonasDepartment of Animal Breeding and Genetics, Swedish University of Agriculture Science, Uppsala, Sweden.
Jean-Christophe BambouURZ Recherches Zootechniques, INRAE, 97170, Petit-Bourg, Guadeloupe, France. jean-christophe.bambou@inrae.fr.
Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRSwedish University of Agricultural Sciences · SECairo University · EGDépartement Santé Animale · FRUnité de Recherche Agrosystèmes tropicaux · GP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gastrointestinal nematode (GIN) infections are one of the major constraints for grazing sheep and goat production worldwide. Genetic selection for resistant animals is a promising control strategy. Whole-transcriptome analysis via RNA-sequencing (RNA-seq) provides knowledge of the mechanisms responsible for complex traits such as resistance to GIN infections. In this study, we used RNA-seq to monitor the dynamics of the response of the abomasal mucosa of Creole goat kids infected with Haemonchus contortus by comparing resistant and susceptible genotypes. A total of 8 cannulated kids, 4 susceptible and 4 resistant to GIN, were infected twice with 10 000 L3 H. contortus. During the second infection, abomasal mucosal biopsies were collected at 0, 8, 15 and 35 days post-infection (dpi) from all kids for RNA-seq analysis. The resistant animals showed early activation of biological processes related to the immune response. The top 20 canonical pathways of differentially expressed genes for different comparison showed activation of the immune response through many relevant pathways including the Th1 response. Interestingly, our results showed a simultaneous time series activation of Th2 related genes in resistant compared to susceptible kids.

Indexed as

TranscriptomeAbomasumAnimalsGastric MucosaGoat DiseasesGoatsHaemonchiasisHaemonchus

Identifiers

PMID32178732
PMCPMC7074999
OpenAlexW3010795462

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.