Evidence map›Paper›PMID 32178422›Full record

ArticleInternational journal of molecular sciences2020

Integrated miRNA/mRNA Counter-Expression Analysis Highlights Oxidative Stress-Related Genes

Miguel Hueso, Adrián Mallén, Ángela Casas, Jordi Guiteras, Fabrizio Sbraga, Arnau Blasco-Lucas, Núria Lloberas, Joan Torras, Josep M Cruzado, Estanislao Navarro

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Differentially expressed mRNAs and their upstream miR-491-5p in patients with coronary atherosclerosis as well as the function of miR-491-5p in vascular smooth muscle cells.The Korean journal of physiology & pharmacology : official journal of the Korean Physiological Society and the Korean Society of Pharmacology · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Construction of Potential miRNA-mRNA Regulatory Network in COPD Plasma by Bioinformatics Analysis.International journal of chronic obstructive pulmonary disease · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Miguel HuesoDepartment of Nephrology, Hospital Universitari Bellvitge, and Institutd'Investigació Biomèdica de Bellvitge-IDIBELL, 08908 L'Hospitalet de Llobregat, Spain.ORCID 0000-0002-1824-9141
Adrián MallénExperimental Nephrology Lab, Institut d'Investigació Biomèdica de Bellvitge-IDIBELL, 08908 L'Hospitalet de Llobregat, Spain.
Ángela CasasExperimental Nephrology Lab, Institut d'Investigació Biomèdica de Bellvitge-IDIBELL, 08908 L'Hospitalet de Llobregat, Spain.
Jordi GuiterasExperimental Nephrology Lab, Institut d'Investigació Biomèdica de Bellvitge-IDIBELL, 08908 L'Hospitalet de Llobregat, Spain.ORCID 0000-0001-6570-4680
Fabrizio SbragaDepartment of Cardiac Surgery, Hospital Universitari Bellvitge, 08907 L'Hospitalet de Llobregat, Spain.ORCID 0000-0003-1249-4119
Arnau Blasco-LucasDepartment of Cardiac Surgery, Hospital Universitari Bellvitge, 08907 L'Hospitalet de Llobregat, Spain.
Núria LloberasExperimental Nephrology Lab, Institut d'Investigació Biomèdica de Bellvitge-IDIBELL, 08908 L'Hospitalet de Llobregat, Spain.
Joan TorrasDepartment of Nephrology, Hospital Universitari Bellvitge, and Institutd'Investigació Biomèdica de Bellvitge-IDIBELL, 08908 L'Hospitalet de Llobregat, Spain.ORCID 0000-0002-1135-7588
Josep M CruzadoDepartment of Nephrology, Hospital Universitari Bellvitge, and Institutd'Investigació Biomèdica de Bellvitge-IDIBELL, 08908 L'Hospitalet de Llobregat, Spain.
Estanislao NavarroIndependent Researcher; C/S. Albert Magne 12-14, Esc-B, SobAtic, Esplugues de llobregat, 08950 Barcelona, Spain.ORCID 0000-0002-0870-6767
Institut d'Investigació Biomédica de Bellvitge · ESBellvitge University Hospital · ES

Funding

Instituto de Salud Carlos III PI 18/01108
6 · The paper itself

Abstract

Our interest in the mechanisms of atherosclerosis progression (ATHp) has led to the recent identification of 13 miRNAs and 1285 mRNAs whose expression was altered during ATHp. Here, we deepen the functional relationship among these 13 miRNAs and genes associated to oxidative stress, a crucial step in the onset and progression of vascular disease. We first compiled a list of genes associated to the response to oxidative stress (Oxstress genes) by performing a reverse Gene Ontology analysis (rGO, from the GO terms to the genes) with the GO terms GO0006979, GO1902882, GO1902883 and GO1902884, which included a total of 417 unique Oxstress genes. Next, we identified 108 putative targets of the 13 miRNAs among these unique Oxstress genes, which were validated by an integrated miRNA/mRNA counter-expression analysis with the 1285 mRNAs that yielded 14 genes,

Indexed as

AnimalsBiomarkersCoronary Artery DiseaseDown-RegulationForkhead Box Protein O1Gene Expression ProfilingGene OntologyGene Regulatory NetworksHumansMiceMicroRNAsOxidative StressProtein Interaction MapsReceptors, CCR7RNA, MessengerSignal TransductionBiomarkersCCR7 protein, humanForkhead Box Protein O1FOXO1 protein, humanMicroRNAsReceptors, CCR7RNA, Messengeratherosclerosis progressionCCR7counter-expression miRNA/mRNA analysisFOXO1oxidative stress

Identifiers

PMID32178422
PMCPMC7139611
OpenAlexW3012356852

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.