Evidence map›Paper›PMID 32174954›Full record

ArticleFrontiers in genetics2019

Single-Nucleotide Polymorphisms (SNP) Mining and Their Effect on the Tridimensional Protein Structure Prediction in a Set of Immunity-Related Expressed Sequence Tags (EST) in Atlantic Salmon (

Eva Vallejos-Vidal, Sebastián Reyes-Cerpa, Jaime Andrés Rivas-Pardo, Kevin Maisey, José M Yáñez, Hector Valenzuela, Pablo A Cea, Victor Castro-Fernandez, Lluis Tort, Ana M Sandino and 2 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 59 citations in OpenAlex.

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  12. Evaluating the association of rs6983267 polymorphism of theMolecular biology research communications · 2023
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  16. An overview of remote monitoring methods in biodiversity conservation.Environmental science and pollution research international · 2022
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  19. Single Nucleotide Polymorphisms inDiagnostics (Basel, Switzerland) · 2022
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Eva Vallejos-VidalDepartment of Cell Biology, Physiology and Immunology, Faculty of Biosciences, Universitat Autònoma de Barcelona, Barcelona, Spain.
Sebastián Reyes-CerpaCentro de Genómica y Bioinformática, Facultad de Ciencias, Universidad Mayor, Santiago, Chile.
Jaime Andrés Rivas-PardoCentro de Genómica y Bioinformática, Facultad de Ciencias, Universidad Mayor, Santiago, Chile.
Kevin MaiseyCentro de Biotecnología Acuícola, Departamento de Biología, Facultad de Química y Biología, Universidad de Santiago de Chile, Santiago, Chile.
José M YáñezFacultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile, Santiago, Chile.
Hector ValenzuelaCentro de Biotecnología Acuícola, Departamento de Biología, Facultad de Química y Biología, Universidad de Santiago de Chile, Santiago, Chile.
Pablo A CeaFacultad de Ciencias, Universidad de Chile, Santiago, Chile.
Victor Castro-FernandezFacultad de Ciencias, Universidad de Chile, Santiago, Chile.
Lluis TortDepartment of Cell Biology, Physiology and Immunology, Faculty of Biosciences, Universitat Autònoma de Barcelona, Barcelona, Spain.
Ana M SandinoCentro de Biotecnología Acuícola, Departamento de Biología, Facultad de Química y Biología, Universidad de Santiago de Chile, Santiago, Chile.
Mónica ImaraiCentro de Biotecnología Acuícola, Departamento de Biología, Facultad de Química y Biología, Universidad de Santiago de Chile, Santiago, Chile.
Felipe E Reyes-LópezDepartment of Cell Biology, Physiology and Immunology, Faculty of Biosciences, Universitat Autònoma de Barcelona, Barcelona, Spain.
Universidad de Santiago de Chile · CLUniversitat Autònoma de Barcelona · ESUniversity of Chile · CLUniversidad Mayor · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Single-nucleotide polymorphisms (SNPs) are single genetic code variations considered one of the most common forms of nucleotide modifications. Such SNPs can be located in genes associated to immune response and, therefore, they may have direct implications over the phenotype of susceptibility to infections affecting the productive sector. In this study, a set of immune-related genes (

Indexed as

3D protein structurehomology modelingimmune responsemolecular dynamics simulationnonsynonymous SNPSalmo salarsingle-nucleotide polymorphismsynonymous SNP

Identifiers

PMID32174954
PMCPMC7056891
OpenAlexW3007654924

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.