Evidence map›Paper›PMID 32171044›Full record

ArticlePlant biotechnology journal2020

Manipulation of ZDS in tomato exposes carotenoid- and ABA-specific effects on fruit development and ripening.

Ryan P McQuinn, Nigel E Gapper, Amanda G Gray, Silin Zhong, Takayuki Tohge, Zhangjun Fei, Alisdair R Fernie, James J Giovannoni

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
5.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 68 citations in OpenAlex.

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  16. Down-regulation ofFrontiers in plant science · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Ryan P McQuinnDepartment of Plant Biology, Cornell University, Ithaca, NY, USA.
Nigel E GapperBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY, USA.
Amanda G GrayBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY, USA.
Silin ZhongBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY, USA.
Takayuki TohgeMax-Planck-Institut fur Molekulare Pflanzenphysiologie, Potsdam-Golm, Germany.
Zhangjun FeiBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY, USA.ORCID 0000-0001-9684-1450
Alisdair R FernieMax-Planck-Institut fur Molekulare Pflanzenphysiologie, Potsdam-Golm, Germany.
James J GiovannoniDepartment of Plant Biology, Cornell University, Ithaca, NY, USA.ORCID 0000-0002-0972-2515
Cornell University · USMax Planck Institute of Molecular Plant Physiology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spontaneous mutations in fruit-specific carotenoid biosynthetic genes of tomato (Solanum lycopersicum) have led to improved understanding of ripening-associated carotenogenesis. Here, we confirm that ZDS is encoded by a single gene in tomato transcriptionally regulated by ripening transcription factors RIN, NOR and ethylene. Manipulation of ZDS was achieved through transgenic repression and heterologous over-expression in tomato. CaMV 35S-driven RNAi repression inhibited carotenoid biosynthesis in all aerial tissues examined resulting in elevated levels of ζ-carotene isomers and upstream carotenoids, while downstream all trans-lycopene and subsequent photoprotective carotenes and xanthophylls were diminished. Consequently, immature fruit displayed photo-bleaching consistent with reduced levels of the photoprotective carotenes and developmental phenotypes related to a reduction in the carotenoid-derived phytohormone abscisic acid (ABA). ZDS-repressed ripe fruit was devoid of the characteristic red carotenoid, all trans-lycopene and displayed brilliant yellow pigmentation due to elevated 9,9' di-cis-ζ-carotene. Over-expression of the Arabidopsis thaliana ZDS (AtZDS) gene bypassed endogenous co-suppression and revealed ZDS as an additional bottleneck in ripening-associated carotenogenesis of tomato. Quantitation of carotenoids in addition to multiple ripening parameters in ZDS-altered lines and ABA-deficient fruit-specific carotenoid mutants was used to separate phenotypic consequences of ABA from other effects of ZDS manipulation and reveal a unique and dynamic ζ-carotene isomer profile in ripe fruit.

Indexed as

Solanum lycopersicumAbscisic AcidCarotenoidsFruitGene Expression Regulation, PlantPlant ProteinsAbscisic AcidCarotenoidsPlant Proteinsabscisic acidcarotenoid biosynthesisfruit developmentfruit ripeningSolanum lycopersicumzeta-carotene desaturase

Identifiers

PMID32171044
PMCPMC7589306
OpenAlexW3011927482

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.