ArticleScientific reports2020
Genome survey of Chinese fir (Cunninghamia lanceolata): Identification of genomic SSRs and demonstration of their utility in genetic diversity analysis.
Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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21 citing papers in PubMed, 27 citations in OpenAlex.
- Article
- Chromosomal evolution and speciation inferred from chromosome-scale genome assemblies in three Cupressaceae species.DNA research : an international journal for rapid publication of reports on genes and genomes · 2026Article
- Genomic insights into the improvement of Chinese fir from ancient domestication continuum to modern breeding.Nature communications · 2026Article
- The Genome Survey Analysis of Female and MaleGenes · 2025Article
- Genetic Differentiation of Chinese Fir Populations From Mainland China and Taiwan as Revealed by Genotyping-By-Sequencing Analysis, With Implication for Taxonomic Position of the Species.Ecology and evolution · 2025Article
- Transcriptome characterisation and population genetics ofBiodiversity data journal · 2025Article
- Genetic Diversity and Population Structure Analysis ofLife (Basel, Switzerland) · 2024Article
- Drought-Induced Alterations in Carbon and Water Dynamics of Chinese Fir Plantations at the Trunk Wood Stage.Plants (Basel, Switzerland) · 2024Article
- Population genetic variation and geographic distribution of suitable areas ofFrontiers in plant science · 2024Article
- A first insight into the genomic background of Ilex pubescens (Aquifoliaceae) by flow cytometry and genome survey sequencing.BMC genomics · 2023Article
- Application of a novel strong promoter from Chinese fir (Frontiers in plant science · 2023Article
- Genetic diversity and structure of the 4Frontiers in plant science · 2023Article
- Transcriptome Level Analysis of Genes of Exogenous Ethylene Applied under Phosphorus Stress in Chinese Fir.Plants (Basel, Switzerland) · 2022Article
- Genome Assembly and Analysis of the Flavonoid and Phenylpropanoid Biosynthetic Pathways in Fingerroot Ginger (International journal of molecular sciences · 2022Article
- Full-Length Transcriptome Sequencing and Comparative Transcriptomic Analyses Provide Comprehensive Insight Into Molecular Mechanisms of Cellulose and Lignin Biosynthesis inFrontiers in plant science · 2022Article
- Exploring theFrontiers in bioengineering and biotechnology · 2022Article
- Genetic diversity and population structure analysis in a large collection of Vicia amoena in China with newly developed SSR markers.BMC plant biology · 2021Article
- Comparative genomic study on the complete plastomes of four officinal Ardisia species in China.Scientific reports · 2021Article
- Genome-wide analysis and functional characterization of the DELLA gene family associated with stress tolerance in B. napus.BMC plant biology · 2021Article
- Development and Characterization of 15 Novel Genomic SSRs forPlants (Basel, Switzerland) · 2021Article
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7 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Chinese fir (Cunninghamia lanceolata) is an important coniferous species that accounts for 20-30% of the total commercial timber production in China. Though traditional breeding of Chinese fir has achieved remarkable success, molecular-assisted breeding has made little progress due to limited availability of genomic information. In this study, a survey of Chinese fir genome was performed using the Illumina HiSeq Xten sequencing platform. K-mer analysis indicated that Chinese fir has a large genome of approximately 11.6 Gb with 74.89% repetitive elements and is highly heterozygous. Meanwhile, its genome size was estimated to be 13.2 Gb using flow cytometry. A total of 778.02 Gb clean reads were assembled into 10,982,272 scaffolds with an N50 of 1.57 kb. In total, 362,193 SSR loci were detected with a frequency of 13.18 kb. Dinucleotide repeats were the most abundant (up to 73.6% of the total SSRs), followed by trinucleotide and tetranucleotide repeats. Forty-six polymorphic pairs were developed, and 298 alleles were successfully amplified from 199 Chinese fir clones. The average PIC value was 0.53, indicating that the identified genomic SSR (gSSR) markers have a high degree of polymorphism. In addition, these breeding resources were divided into three groups, and a limited gene flow existed among these inferred groups.
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