Evidence map›Paper›PMID 32170160›Full record

ArticleScientific reports2020

LC-HRMS based approach to identify novel sphingolipid biomarkers in breast cancer patients.

Priyanka Bhadwal, Divya Dahiya, Dhananjay Shinde, Kim Vaiphei, Raviswamy G H Math, Vinay Randhawa, Navneet Agnihotri

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

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  10. Emerging Roles of Ceramides in Breast Cancer Biology and Therapy.International journal of molecular sciences · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Priyanka BhadwalDepartment of Biochemistry, Panjab University, Chandigarh, India.
Divya DahiyaDepartment of General Surgery, PGIMER, Chandigarh, India.
Dhananjay ShindeDepartment of Pathology and Microbiology, University of Nebraska Medical Centre, Omaha, USA.
Kim VaipheiDepartment of Histopathology, PGIMER, Chandigarh, India.
Raviswamy G H MathMass Spectrometry Facility, NCBS/InStem, Bangalore, India.
Vinay RandhawaDepartment of Biochemistry, Panjab University, Chandigarh, India.
Navneet AgnihotriDepartment of Biochemistry, Panjab University, Chandigarh, India. agnihotri.navneet@gmail.com.
Panjab University · INPost Graduate Institute of Medical Education and Research · INUniversity of Nebraska Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Perturbations in lipid metabolic pathways to meet the bioenergetic and biosynthetic requirements is a principal characteristic of cancer cells. Sphingolipids (SPLs) are the largest class of bioactive lipids associated to various aspects of tumorigenesis and have been extensively studied in cancer cell lines and experimental models. The clinical relevance of SPLs in human malignancies however is still poorly understood and needs further investigation. In the present study, we adopted a UHPLC-High resolution (orbitrap) Mass spectrometry (HRMS) approach to identify various sphingolipid species in breast cancer patients. A total of 49 SPLs falling into 6 subcategories have been identified. Further, integrating the multivariate analysis with metabolomics enabled us to identify an elevation in the levels of ceramide phosphates and sphingosine phosphates in tumor tissues as compared to adjacent normal tissues. The expression of genes involved in the synthesis of reported metabolites was also determined in local as well as TCGA cohort. A significant upregulation in the expression of CERK and SPHK1 was observed in tumor tissues in local and TCGA cohort. Sphingomyelin levels were found to be high in adjacent normal tissues. Consistent with the above findings, expression of SGMS1 in tumor tissues was downregulated in TCGA cohort only. Clinical correlations of the selected metabolites and their performance as biomarkers was also evaluated. Significant ROC and positive correlation with Ki67 index highlight the diagnostic potential and clinical relevance of ceramide phosphates in breast cancer.

Indexed as

AdultAgedBiomarkersBiomarkers, TumorBreast NeoplasmsChromatography, High Pressure LiquidComputational BiologyFemaleHumansLipid MetabolismMass SpectrometryMetabolomicsMiddle AgedNeoplasm StagingROC CurveSphingolipidsBiomarkersBiomarkers, TumorSphingolipids

Identifiers

PMID32170160
PMCPMC7070000
OpenAlexW3011167535

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.