Evidence map›Paper›PMID 32170132›Full record

ArticleNature communications2020

Amino acid levels determine metabolism and CYP450 function of hepatocytes and hepatoma cell lines.

Ruben Boon, Manoj Kumar, Tine Tricot, Ilaria Elia, Laura Ordovas, Frank Jacobs, Jennifer One, Jonathan De Smedt, Guy Eelen, Matthew Bird and 18 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed, 1 pooled it
11.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 1 synthesis or guideline pooled it, 125 citations in OpenAlex.

  1. Pooled it
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  4. Systematic comparison of temporal hepatotoxicant-induced gene network responses across 3 liver test systems.Toxicological sciences : an official journal of the Society of Toxicology · 2026
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13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 9 institutions in 4 countries.

Ruben BoonDepartment of Development and Regeneration, Stem Cell Institute, KU Leuven, Leuven, Belgium. rboon@mgh.harvard.edu.ORCID http://orcid.org/0000-0002-9355-674X
Manoj Kumar *Department of Development and Regeneration, Stem Cell Institute, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0002-0572-5786
Tine Tricot *Department of Development and Regeneration, Stem Cell Institute, KU Leuven, Leuven, Belgium.
Ilaria EliaLaboratory of Cellular Metabolism and Metabolic Regulation, VIB Center for Cancer Biology, VIB, Leuven, Belgium.
Laura OrdovasDepartment of Development and Regeneration, Stem Cell Institute, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0003-3982-1263
Frank JacobsJanssen Research and Development, Beerse, Belgium.
Jennifer OneDepartment of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN, USA.
Jonathan De SmedtDepartment of Development and Regeneration, Stem Cell Institute, KU Leuven, Leuven, Belgium.
Guy EelenLaboratory of Angiogenesis and Vascular Metabolism, Department of Oncology, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0003-3354-5819
Matthew BirdHepatology, Department of Clinical and Experimental Medicine, KU Leuven, Leuven, Belgium.
Philip RoelandtDepartment of Development and Regeneration, Stem Cell Institute, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0003-4475-9089
Ginevra DoglioniLaboratory of Cellular Metabolism and Metabolic Regulation, VIB Center for Cancer Biology, VIB, Leuven, Belgium.
Kim VriensLaboratory of Cellular Metabolism and Metabolic Regulation, VIB Center for Cancer Biology, VIB, Leuven, Belgium.
Matteo RossiLaboratory of Cellular Metabolism and Metabolic Regulation, VIB Center for Cancer Biology, VIB, Leuven, Belgium.
Marta Aguirre VazquezDepartment of Development and Regeneration, Stem Cell Institute, KU Leuven, Leuven, Belgium.
Thomas VanweldenDepartment of Development and Regeneration, Stem Cell Institute, KU Leuven, Leuven, Belgium.
François ChesnaisDepartment of Development and Regeneration, Stem Cell Institute, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0002-0247-7908
Adil El TaghdouiniLaboratory of Pediatric Hepatology and Cell Therapy, Universit Catholique de Louvain & Cliniques Universitaires St Luc, Institut de Recherche Clinique et Expérimentale (IREC), Brussels, Belgium.
Mustapha NajimiLaboratory of Pediatric Hepatology and Cell Therapy, Universit Catholique de Louvain & Cliniques Universitaires St Luc, Institut de Recherche Clinique et Expérimentale (IREC), Brussels, Belgium.ORCID http://orcid.org/0000-0002-7329-9635
Etienne SokalLaboratory of Pediatric Hepatology and Cell Therapy, Universit Catholique de Louvain & Cliniques Universitaires St Luc, Institut de Recherche Clinique et Expérimentale (IREC), Brussels, Belgium.
David CassimanHepatology, Department of Clinical and Experimental Medicine, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0002-6154-0970
Jan SnoeysDepartment of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN, USA.ORCID http://orcid.org/0000-0003-3420-424X
Mario MonshouwerDepartment of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN, USA.
Wei-Shou HuDepartment of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, MN, USA.
Christian LangeLaboratory of Angiogenesis and Vascular Metabolism, Department of Oncology, KU Leuven, Leuven, Belgium.
Peter CarmelietLaboratory of Angiogenesis and Vascular Metabolism, Department of Oncology, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0001-7961-1821
Sarah-Maria FendtLaboratory of Cellular Metabolism and Metabolic Regulation, VIB Center for Cancer Biology, VIB, Leuven, Belgium.ORCID http://orcid.org/0000-0001-6018-9296
Catherine M VerfaillieDepartment of Development and Regeneration, Stem Cell Institute, KU Leuven, Leuven, Belgium. catherine.verfaillie@kuleuven.be.ORCID http://orcid.org/0000-0001-7564-4079
KU Leuven · BEVIB-KU Leuven Center for Cancer Biology · BEUniversity of Minnesota · USCliniques Universitaires Saint-Luc · BEFundacion Agencia Aragonesa para la Investigacion y el Desarrollo · ESJanssen (Belgium) · BERega Institute for Medical Research · BEStem Cell Institute · PAUniversitair Ziekenhuis Leuven · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Predicting drug-induced liver injury in a preclinical setting remains challenging, as cultured primary human hepatocytes (PHHs), pluripotent stem cell-derived hepatocyte-like cells (HLCs), and hepatoma cells exhibit poor drug biotransformation capacity. We here demonstrate that hepatic functionality depends more on cellular metabolism and extracellular nutrients than on developmental regulators. Specifically, we demonstrate that increasing extracellular amino acids beyond the nutritional need of HLCs and HepG2 cells induces glucose independence, mitochondrial function, and the acquisition of a transcriptional profile that is closer to PHHs. Moreover, we show that these high levels of amino acids are sufficient to drive HLC and HepG2 drug biotransformation and liver-toxin sensitivity to levels similar to those in PHHs. In conclusion, we provide data indicating that extracellular nutrient levels represent a major determinant of cellular maturity and can be utilized to guide stem cell differentiation to the hepatic lineage.

Indexed as

Amino AcidsCarcinoma, HepatocellularCell DifferentiationCell Line, TumorCytochrome P-450 CYP3ACytochrome P-450 Enzyme SystemFemaleGene Knockout TechniquesHepatocyte Nuclear Factor 1-alphaHepatocyte Nuclear Factor 3-gammaHepatocytesHep G2 CellsHigh-Throughput Screening AssaysHomeodomain ProteinsHumansLiverAmino AcidsCYP3A4 protein, humanCytochrome P-450 CYP3ACytochrome P-450 Enzyme SystemFOXA3 protein, humanHepatocyte Nuclear Factor 1-alphaHepatocyte Nuclear Factor 3-gammaHNF1A protein, humanHomeodomain ProteinsProspero-Related Homeobox 1 ProteinTumor Suppressor Proteins

Identifiers

PMID32170132
PMCPMC7069944
OpenAlexW3011371956

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.