Evidence map›Paper›PMID 32169002›Full record

ReviewAnnual review of biomedical engineering2020

Sparse Data-Driven Learning for Effective and Efficient Biomedical Image Segmentation.

John A Onofrey, Lawrence H Staib, Xiaojie Huang, Fan Zhang, Xenophon Papademetris, Dimitris Metaxas, Daniel Rueckert, James S Duncan

Abstract readReview
In one paragraph

Review in Annual review of biomedical engineering, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

John A OnofreyDepartment of Radiology and Biomedical Imaging, Yale School of Medicine, New Haven, Connecticut 06520, USA; email: john.onofrey@yale.edu.
Lawrence H StaibDepartment of Radiology and Biomedical Imaging, Yale School of Medicine, New Haven, Connecticut 06520, USA; email: john.onofrey@yale.edu.
Xiaojie HuangDepartment of Radiology and Biomedical Imaging, Yale School of Medicine, New Haven, Connecticut 06520, USA; email: john.onofrey@yale.edu.
Fan ZhangDepartment of Radiology and Biomedical Imaging, Yale School of Medicine, New Haven, Connecticut 06520, USA; email: john.onofrey@yale.edu.
Xenophon PapademetrisDepartment of Radiology and Biomedical Imaging, Yale School of Medicine, New Haven, Connecticut 06520, USA; email: john.onofrey@yale.edu.
Dimitris MetaxasDepartment of Computer Science, Rutgers University, Piscataway, New Jersey 08854, USA.
Daniel RueckertDepartment of Computing, Imperial College London, London SW7 2AZ, United Kingdom.
James S DuncanDepartment of Radiology and Biomedical Imaging, Yale School of Medicine, New Haven, Connecticut 06520, USA; email: john.onofrey@yale.edu.

Funding

Subnetwork-based Quantitative Imaging Biomarkers for Therapy Assessment in AutismR01NS035193 · NINDS · YALE UNIVERSITY · PI JAMES S DUNCAN, LAWRENCE H. STAIB · 1996 to 2026
$9.2M
LV Strain Quantification from 4D EchocardiographyR01HL082640 · NHLBI · YALE UNIVERSITY · PI DUNCAN, JAMES S · 2006 to 2010
$7.0M
q4DE: A Biomarker for Image-Guided, Post-MI Hydrogel TherapyR01HL121226 · NHLBI · YALE UNIVERSITY · PI DUNCAN, JAMES S, O'DONNELL, MATTHEW · 2014 to 2022
$6.3M
Quantitative Multimodal Imaging Biomarkers for Combined Locoregional and Immunotherapy of Liver CancerR01CA206180 · NCI · YALE UNIVERSITY · PI CHAPIRO, JULIUS, DUNCAN, JAMES S · 2016 to 2025
$6.1M
Training In Multi-modality Molecular & Translational Cardiovascular ImagingT32HL098069 · NHLBI · YALE UNIVERSITY · PI JAMES S DUNCAN, Georges El Fakhri · 2010 to 2026
$5.2M
Image Analysis Tools for mpMRI Prostate Cancer Diagnosis Using PI-RADSR42CA224888 · NCI · EIGEN HEALTH SERVICES LLC · PI ONOFREY, JOHN AARON · 2020 to 2021
$1.5M
Image Analysis Tools for mpMRI Prostate Cancer Diagnosis Using PI-RADSR41CA224888 · NCI · ZMK MEDICAL TECHNOLOGIES, D/B/A EIGEN · PI ONOFREY, JOHN AARON · 2018 to 2018
$266k
NCI NIH HHS R01 CA206180NCI NIH HHS R41 CA224888NCI NIH HHS R42 CA224888NHLBI NIH HHS R01 HL082640NHLBI NIH HHS R01 HL121226NHLBI NIH HHS T32 HL098069NINDS NIH HHS R01 NS035193
6 · The paper itself

Abstract

Sparsity is a powerful concept to exploit for high-dimensional machine learning and associated representational and computational efficiency. Sparsity is well suited for medical image segmentation. We present a selection of techniques that incorporate sparsity, including strategies based on dictionary learning and deep learning, that are aimed at medical image segmentation and related quantification.

Indexed as

AlgorithmsAnimalsBrainDeep LearningDogsEchocardiographyHeart VentriclesHumansImage Processing, Computer-AssistedImaging, Three-DimensionalMachine LearningModels, TheoreticalNeural Networks, ComputerTomography, X-Ray Computeddictionary learningimage representationimage segmentationmachine learningmedical image analysissparsity

Identifiers

PMID32169002
PMCPMC9351438

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.