ArticlePlant biotechnology journal2020
Arachis hypogaea gene expression atlas for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications.
Article in Plant biotechnology journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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Who cites it
30 citing papers in PubMed.
- Whole genome sequencing-based multi-locus association mapping for kernel iron, zinc and protein content in groundnut.Scientific reports · 2026Article
- Genome wide association study uncovers significant SNPs and candidate genes for kernel grades in groundnut (Arachis hypogaea L.).BMC genomics · 2025Article
- Integration of single-nuclei transcriptome and bulk RNA-seq to unravel the role of AhWRKY70 in regulating stem cell development in Arachis hypogaea L.Plant biotechnology journal · 2025Article
- Identification of miRNAs associated with Aspergillus flavus infection and their targets in groundnut (Arachis hypogaea L.).BMC plant biology · 2025Article
- Multi-locus genome wide association study uncovers genetics of fresh seed dormancy in groundnut.BMC plant biology · 2024Article
- Dissecting genomic regions and underlying candidate genes in groundnut MAGIC population for drought tolerance.BMC plant biology · 2024Article
- ScRNA-seq reveals dark- and light-induced differentially expressed gene atlases of seedling leaves in Arachis hypogaea L.Plant biotechnology journal · 2024Article
- Celebrating Professor Rajeev K. Varshney's transformative research odyssey from genomics to the field on his induction as Fellow of the Royal Society.Plant biotechnology journal · 2024Article
- Genome-wide identification and characterization of NAC transcription factor family members in Trifolium pratense and expression analysis under lead stress.BMC genomics · 2024Article
- Article
- Whole-genome sequencing based discovery of candidate genes and diagnostic markers for seed weight in groundnut.The plant genome · 2023Article
- Genetic mapping identified major main-effect and three co-localized quantitative trait loci controlling high iron and zinc content in groundnut.The plant genome · 2023Article
- Genetic mapping identifies genomic regions and candidate genes for seed weight and shelling percentage in groundnut.Frontiers in genetics · 2023Article
- Genetic mapping identified three hotspot genomic regions and candidate genes controlling heat tolerance-related traits in groundnut.Frontiers in plant science · 2023Article
- Multi-Omics Profiling Identifies Candidate Genes Controlling Seed Size in Peanut.Plants (Basel, Switzerland) · 2022Article
- An integrated transcriptome mapping the regulatory network of coding and long non-coding RNAs provides a genomics resource in chickpea.Communications biology · 2022Article
- Genome-wide identification of germin-like proteins in peanut (Frontiers in plant science · 2022Article
- Genome-Wide Characterization of Ascorbate Peroxidase Gene Family in Peanut (Frontiers in plant science · 2022Article
- CRISPR/Cas9 Based Site-Specific Modification of FAD2Frontiers in genetics · 2022Article
- Article
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14 authors.
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Abstract
Spatio-temporal and developmental stage-specific transcriptome analysis plays a crucial role in systems biology-based improvement of any species. In this context, we report here the Arachis hypogaea gene expression atlas (AhGEA) for the world's widest cultivated subsp. fastigiata based on RNA-seq data using 20 diverse tissues across five key developmental stages. Approximately 480 million paired-end filtered reads were generated followed by identification of 81 901 transcripts from an early-maturing, high-yielding, drought-tolerant groundnut variety, ICGV 91114. Further, 57 344 genome-wide transcripts were identified with ≥1 FPKM across different tissues and stages. Our in-depth analysis of the global transcriptome sheds light into complex regulatory networks namely gravitropism and photomorphogenesis, seed development, allergens and oil biosynthesis in groundnut. Importantly, interesting insights into molecular basis of seed development and nodulation have immense potential for translational genomics research. We have also identified a set of stable expressing transcripts across the selected tissues, which could be utilized as internal controls in groundnut functional genomics studies. The AhGEA revealed potential transcripts associated with allergens, which upon appropriate validation could be deployed in the coming years to develop consumer-friendly groundnut varieties. Taken together, the AhGEA touches upon various important and key features of cultivated groundnut and provides a reference for further functional, comparative and translational genomics research for various economically important traits.
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