Evidence map›Paper›PMID 32166358›Full record

ArticleArchives of microbiology2020

The whole-genome sequence analysis of Enterobacter cloacae strain Ghats1: insights into endophytic lifestyle-associated genomic adaptations.

Rajesh P Shastry, Martin Welch, V Ravishankar Rai, Sudeep D Ghate, K Sandeep, P D Rekha

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Article in Archives of microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. GeneFrontiers in microbiology · 2022
    Article
  9. Article
  10. Article
  11. Review
  12. We and herbivores eat endophytes.Microbial biotechnology · 2021
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rajesh P ShastryYenepoya Research Centre, Yenepoya (Deemed to be University), Deralakatte, Mangalore, 575018, India. rpshastry@yenepoya.edu.in.
Martin WelchDepartment of Biochemistry, University of Cambridge, Cambridge, CB2 1QW, UK.
V Ravishankar RaiDepartment of Studies in Microbiology, University of Mysore, Manasagangotri, Mysore, 570006, India.
Sudeep D GhateYenepoya Research Centre, Yenepoya (Deemed to be University), Deralakatte, Mangalore, 575018, India.
K SandeepYenepoya Research Centre, Yenepoya (Deemed to be University), Deralakatte, Mangalore, 575018, India.
P D RekhaYenepoya Research Centre, Yenepoya (Deemed to be University), Deralakatte, Mangalore, 575018, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enterobacter cloacae is normally considered to be an opportunistic human pathogen. Here, we report on the whole-genome sequence of an endophytic E. cloacae, strain "Ghats1", isolated from leaves of the medicinal plant Coscinium fenestratum Gaertn. Functional analysis of the Ghats1 genome revealed an enrichment for genes involved in the uptake and exchange of nutrients, for chemotaxis and for plant colonization. Unexpectedly though, there were no ORFs belonging to the "virulence factors and antibiotic resistance". Moreover, the presence of hydrolytic enzymes and motility functions reveals the characteristics of an endophyte lifestyle of a bacterium that can colonize and adapt to plant environment. These results provide a better understanding of an endophytic lifestyle through plant-microbe interaction, which can be further exploited as a biocontrol agent.

Indexed as

AcclimatizationEndophytesEnterobacter cloacaeGenome, BacterialGenomicsHumansLife StyleMenispermaceaePlantsWhole Genome SequencingAntibiotic resistanceEndophyteEnterobacter cloacaeGenome sequencePlant–microbe interaction

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.