Evidence map›Paper›PMID 32165630›Full record

ArticleNature communications2020

FAM111A protects replication forks from protein obstacles via its trypsin-like domain.

Yusuke Kojima, Yuka Machida, Sowmiya Palani, Thomas R Caulfield, Evette S Radisky, Scott H Kaufmann, Yuichi J Machida

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed, 2 pooled it
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 2 syntheses or guidelines pooled it, 113 citations in OpenAlex.

  1. Pooled it
  2. Expanding the Phenotypic Spectrum of Kenny-Caffey Syndrome.The Journal of clinical endocrinology and metabolism · 2023
    Pooled it
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22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Yusuke KojimaDepartment of Oncology, Mayo Clinic, Rochester, MN, 55905, USA.
Yuka MachidaDepartment of Oncology, Mayo Clinic, Rochester, MN, 55905, USA.
Sowmiya PalaniDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN, 55905, USA.
Thomas R CaulfieldDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.ORCID http://orcid.org/0000-0002-1055-3069
Evette S RadiskyDepartment of Cancer Biology, Mayo Clinic, Jacksonville, FL, 32224, USA.
Scott H KaufmannDepartment of Oncology, Mayo Clinic, Rochester, MN, 55905, USA.ORCID http://orcid.org/0000-0002-4900-7145
Yuichi J MachidaDepartment of Oncology, Mayo Clinic, Rochester, MN, 55905, USA. machida.yuichi@mayo.edu.
Mayo Clinic · USMayo Clinic in Florida · USMayo Clinic in Arizona · US

Funding

DNA-Protein Crosslinks and Genomic InstabilityR01CA233700 · NCI · MAYO CLINIC ROCHESTER · PI SCHELLENBERG, MATTHEW J · 2019 to 2023
$1.8M
NCI NIH HHS R01 CA233700
6 · The paper itself

Abstract

Persistent protein obstacles on genomic DNA, such as DNA-protein crosslinks (DPCs) and tight nucleoprotein complexes, can block replication forks. DPCs can be removed by the proteolytic activities of the metalloprotease SPRTN or the proteasome in a replication-coupled manner; however, additional proteolytic mechanisms may exist to cope with the diversity of protein obstacles. Here, we show that FAM111A, a PCNA-interacting protein, plays an important role in mitigating the effect of protein obstacles on replication forks. This function of FAM111A requires an intact trypsin-like protease domain, the PCNA interaction, and the DNA-binding domain that is necessary for protease activity in vivo. FAM111A, but not SPRTN, protects replication forks from stalling at poly(ADP-ribose) polymerase 1 (PARP1)-DNA complexes trapped by PARP inhibitors, thereby promoting cell survival after drug treatment. Altogether, our findings reveal a role of FAM111A in overcoming protein obstacles to replication forks, shedding light on cellular responses to anti-cancer therapies.

Indexed as

DNA ReplicationCamptothecinCell Cycle CheckpointsCell Line, TumorDNA DamageDNA, Single-StrandedDNA Topoisomerases, Type IHumansMutationPoly(ADP-ribose) Polymerase InhibitorsPoly(ADP-ribose) PolymerasesProtein BindingProtein DomainsReceptors, VirusTrypsinCamptothecinDNA, Single-StrandedDNA Topoisomerases, Type IFAM111A protein, humanPoly(ADP-ribose) Polymerase InhibitorsPoly(ADP-ribose) PolymerasesReceptors, VirusTrypsin

Identifiers

PMID32165630
PMCPMC7067828
OpenAlexW3011781484

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.