Evidence map›Paper›PMID 32164600›Full record

ArticleBMC cancer2020

Genetic mutational analysis of pediatric acute lymphoblastic leukemia from a single center in China using exon sequencing.

Honghong Zhang, Hongsheng Wang, Xiaowen Qian, Shuai Gao, Jieqi Xia, Junwen Liu, Yanqin Cheng, Jie Man, Xiaowen Zhai

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 32 citations in OpenAlex.

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  4. Balkan journal of medical genetics : BJMG · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Honghong ZhangDepartment of Hematology oncology, Children's hospital of Fudan university, 399 Wanyuan Road, Shanghai, China.
Hongsheng WangDepartment of Hematology oncology, Children's hospital of Fudan university, 399 Wanyuan Road, Shanghai, China.
Xiaowen QianDepartment of Hematology oncology, Children's hospital of Fudan university, 399 Wanyuan Road, Shanghai, China.
Shuai GaoClinical laboratory center, Children's hospital of Fudan University, Shanghai, China.
Jieqi XiaClinical laboratory center, Children's hospital of Fudan University, Shanghai, China.
Junwen LiuClinical laboratory center, Children's hospital of Fudan University, Shanghai, China.
Yanqin ChengDepartment of Hematology oncology, Children's hospital of Fudan university, 399 Wanyuan Road, Shanghai, China.
Jie ManDepartment of Hematology oncology, Children's hospital of Fudan university, 399 Wanyuan Road, Shanghai, China.
Xiaowen ZhaiDepartment of Hematology oncology, Children's hospital of Fudan university, 399 Wanyuan Road, Shanghai, China. zhaixiaowendy@163.com.ORCID http://orcid.org/0000-0002-8127-3232
Children's Hospital of Fudan University · CN

Funding

Research Programs of the Shanghai Science and Technology Commission Foundation No.14411950603Shanghai Municipal Commission of Health and Family Planning No. 201740011
6 · The paper itself

Abstract

backgroundAcute lymphoblastic leukemia (ALL), the most common childhood malignancy, is characterized by recurring structural chromosomal alterations and genetic alterations, whose detection is critical in diagnosis, risk stratification and prognostication. However, the genetic mechanisms that give rise to ALL remain poorly understood.

methodsUsing next-generation sequencing (NGS) in matched germline and tumor samples from 140 pediatric Chinese patients with ALL, we landscaped the gene mutations and estimated the mutation frequencies in this disease.

resultsOur results showed that the top driver oncogenes having a mutation prevalence over 5% in childhood ALL included KRAS (8.76%), NRAS (6.4%), FLT3 (5.7%) and KMT2D (5.0%). While the most frequently mutated genes were KRAS, NRAS and FLT3 in B cell ALL (B-ALL), the most common mutations were enriched in NOTCH1 (23.1%), FBXW7 (23.1%) and PHF6 (11.5%) in T cell ALL (T-ALL). These mutant genes are involved in key molecular processes, including the Ras pathway, the Notch pathway, epigenetic modification, and cell-cycle regulation. Strikingly, more than 50% of mutations occurred in the high-hyperdiploid (HeH) ALL existed in Ras pathway, especially FLT3 (20%). We also found that the epigenetic regulator gene KMT2D, which is frequently mutated in ALL, may be involved in driving leukemia transformation, as evidenced by an in vitro functional assay.

conclusionOverall, this study provides further insights into the genetic basis of ALL and shows that Ras mutations are predominant in childhood ALL, especially in the high-hyperdiploid subtype in our research.

Indexed as

Gene Regulatory NetworksCell Line, TumorChildChinaDNA-Binding ProteinsDNA Mutational AnalysisExonsF-Box-WD Repeat-Containing Protein 7fms-Like Tyrosine Kinase 3GTP PhosphohydrolasesHigh-Throughput Nucleotide SequencingHumansMembrane ProteinsMutation RateNeoplasm ProteinsPrecursor Cell Lymphoblastic Leukemia-LymphomaDNA-Binding ProteinsF-Box-WD Repeat-Containing Protein 7FBXW7 protein, humanFLT3 protein, humanfms-Like Tyrosine Kinase 3GTP PhosphohydrolasesKMT2D protein, humanKRAS protein, humanMembrane ProteinsNeoplasm ProteinsNOTCH1 protein, humanNRAS protein, humanPHF6 protein, humanProto-Oncogene Proteins p21(ras)Receptor, Notch1Repressor ProteinsAcute lymphoblastic leukemiaGenomicsKMT2DMolecular pathogenesisPediatrics

Identifiers

PMID32164600
PMCPMC7068927
OpenAlexW3012175741

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.